Hb_078477_010

Information

Type -
Description -
Location Contig78477: 8065-13393
Sequence    

Annotation

kegg
ID tcc:TCM_042558
description LRR receptor-like serine/threonine-protein kinase, putative
nr
ID XP_007009037.1
description LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
swissprot
ID C0LGT6
description LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1
trembl
ID A0A061FMD3
description LRR receptor-like serine/threonine-protein kinase, putative OS=Theobroma cacao GN=TCM_042558 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078477_010 0.0 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
2 Hb_022630_010 0.0258760012 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
3 Hb_005648_030 0.0595534728 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH18-like [Jatropha curcas]
4 Hb_000333_150 0.0886438088 - - hypothetical protein RCOM_0711500 [Ricinus communis]
5 Hb_004656_030 0.0975356521 - - putative pectin methylesterase family protein [Populus trichocarpa]
6 Hb_001405_260 0.0989392549 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]
7 Hb_044026_010 0.0996946078 - - PREDICTED: cytochrome P450 93A3-like [Jatropha curcas]
8 Hb_027913_010 0.0998994539 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_001190_020 0.1034407831 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_001403_070 0.1065229869 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
11 Hb_000959_290 0.1075909748 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
12 Hb_002193_050 0.1081131313 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
13 Hb_006519_010 0.1097421763 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 [Vitis vinifera]
14 Hb_004994_070 0.1143303674 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
15 Hb_004059_010 0.1143730279 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
16 Hb_033153_010 0.1158817128 - - PREDICTED: MLO-like protein 12 [Jatropha curcas]
17 Hb_007850_050 0.116783479 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
18 Hb_005588_010 0.1192096906 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
19 Hb_001511_130 0.1251266141 - - PREDICTED: taxadien-5-alpha-ol O-acetyltransferase [Jatropha curcas]
20 Hb_001749_020 0.1274750883 - - hypothetical protein CISIN_1g042220mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_078477_010 Hb_078477_010 Hb_022630_010 Hb_022630_010 Hb_078477_010--Hb_022630_010 Hb_005648_030 Hb_005648_030 Hb_078477_010--Hb_005648_030 Hb_000333_150 Hb_000333_150 Hb_078477_010--Hb_000333_150 Hb_004656_030 Hb_004656_030 Hb_078477_010--Hb_004656_030 Hb_001405_260 Hb_001405_260 Hb_078477_010--Hb_001405_260 Hb_044026_010 Hb_044026_010 Hb_078477_010--Hb_044026_010 Hb_022630_010--Hb_005648_030 Hb_022630_010--Hb_004656_030 Hb_027913_010 Hb_027913_010 Hb_022630_010--Hb_027913_010 Hb_002193_050 Hb_002193_050 Hb_022630_010--Hb_002193_050 Hb_001403_070 Hb_001403_070 Hb_022630_010--Hb_001403_070 Hb_005648_030--Hb_001405_260 Hb_005648_030--Hb_044026_010 Hb_005588_010 Hb_005588_010 Hb_005648_030--Hb_005588_010 Hb_033153_010 Hb_033153_010 Hb_005648_030--Hb_033153_010 Hb_008978_010 Hb_008978_010 Hb_000333_150--Hb_008978_010 Hb_004994_070 Hb_004994_070 Hb_000333_150--Hb_004994_070 Hb_000959_290 Hb_000959_290 Hb_000333_150--Hb_000959_290 Hb_000333_150--Hb_044026_010 Hb_093204_010 Hb_093204_010 Hb_000333_150--Hb_093204_010 Hb_004656_030--Hb_027913_010 Hb_000656_360 Hb_000656_360 Hb_004656_030--Hb_000656_360 Hb_003847_140 Hb_003847_140 Hb_004656_030--Hb_003847_140 Hb_001749_020 Hb_001749_020 Hb_004656_030--Hb_001749_020 Hb_001405_260--Hb_044026_010 Hb_005643_020 Hb_005643_020 Hb_001405_260--Hb_005643_020 Hb_001405_260--Hb_005588_010 Hb_001405_260--Hb_022630_010 Hb_110048_010 Hb_110048_010 Hb_044026_010--Hb_110048_010 Hb_004157_080 Hb_004157_080 Hb_044026_010--Hb_004157_080 Hb_111908_010 Hb_111908_010 Hb_044026_010--Hb_111908_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.498961 0.0165627 0.0162096 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0154704 0

CAGE analysis