Hb_111908_010

Information

Type -
Description -
Location Contig111908: 11828-12886
Sequence    

Annotation

kegg
ID rcu:RCOM_1432010
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002512391.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9LSV3
description Putative wall-associated receptor kinase-like 16 OS=Arabidopsis thaliana GN=WAKL16 PE=3 SV=1
trembl
ID B9RF72
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1432010 PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_111908_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_004117_360 0.0548180765 - - hypothetical protein JCGZ_00367 [Jatropha curcas]
3 Hb_001514_110 0.0552650207 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005725_180 0.0658201147 - - -
5 Hb_110048_010 0.071419797 - - PREDICTED: uncharacterized protein LOC104887199 [Beta vulgaris subsp. vulgaris]
6 Hb_012691_040 0.0725305269 - - PREDICTED: cytochrome P450 81E8-like [Fragaria vesca subsp. vesca]
7 Hb_005843_070 0.0733137879 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
8 Hb_073423_010 0.080847996 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_004157_080 0.0841438539 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
10 Hb_002486_030 0.0881488945 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
11 Hb_142691_010 0.0910379423 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
12 Hb_008579_010 0.0914865022 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
13 Hb_011111_010 0.0919010044 - - PREDICTED: putative RING-H2 finger protein ATL21A [Jatropha curcas]
14 Hb_005946_190 0.0936731414 - - hypothetical protein EUGRSUZ_C01051 [Eucalyptus grandis]
15 Hb_044026_010 0.0949376929 - - PREDICTED: cytochrome P450 93A3-like [Jatropha curcas]
16 Hb_143232_020 0.0980153432 - - hypothetical protein JCGZ_20467 [Jatropha curcas]
17 Hb_001565_050 0.1021193847 - - PREDICTED: receptor-like protein kinase 5 [Eucalyptus grandis]
18 Hb_015978_040 0.1166744167 - - PREDICTED: uncharacterized protein LOC105642609 [Jatropha curcas]
19 Hb_022768_010 0.1176439001 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
20 Hb_147137_020 0.118366699 - - hypothetical protein JCGZ_07227 [Jatropha curcas]

Gene co-expression network

sample Hb_111908_010 Hb_111908_010 Hb_004117_360 Hb_004117_360 Hb_111908_010--Hb_004117_360 Hb_001514_110 Hb_001514_110 Hb_111908_010--Hb_001514_110 Hb_005725_180 Hb_005725_180 Hb_111908_010--Hb_005725_180 Hb_110048_010 Hb_110048_010 Hb_111908_010--Hb_110048_010 Hb_012691_040 Hb_012691_040 Hb_111908_010--Hb_012691_040 Hb_005843_070 Hb_005843_070 Hb_111908_010--Hb_005843_070 Hb_004117_360--Hb_001514_110 Hb_004117_360--Hb_012691_040 Hb_073423_010 Hb_073423_010 Hb_004117_360--Hb_073423_010 Hb_002486_030 Hb_002486_030 Hb_004117_360--Hb_002486_030 Hb_008579_010 Hb_008579_010 Hb_004117_360--Hb_008579_010 Hb_142691_010 Hb_142691_010 Hb_004117_360--Hb_142691_010 Hb_001514_110--Hb_012691_040 Hb_001514_110--Hb_005725_180 Hb_001514_110--Hb_073423_010 Hb_001514_110--Hb_142691_010 Hb_001514_110--Hb_002486_030 Hb_005725_180--Hb_005843_070 Hb_005725_180--Hb_012691_040 Hb_005725_180--Hb_004117_360 Hb_015978_040 Hb_015978_040 Hb_005725_180--Hb_015978_040 Hb_000002_130 Hb_000002_130 Hb_110048_010--Hb_000002_130 Hb_110562_020 Hb_110562_020 Hb_110048_010--Hb_110562_020 Hb_044026_010 Hb_044026_010 Hb_110048_010--Hb_044026_010 Hb_000172_730 Hb_000172_730 Hb_110048_010--Hb_000172_730 Hb_000926_170 Hb_000926_170 Hb_110048_010--Hb_000926_170 Hb_012691_040--Hb_142691_010 Hb_012691_040--Hb_008579_010 Hb_012691_040--Hb_073423_010 Hb_012691_040--Hb_002486_030 Hb_005843_070--Hb_001514_110 Hb_005946_190 Hb_005946_190 Hb_005843_070--Hb_005946_190 Hb_005843_070--Hb_015978_040 Hb_005843_070--Hb_012691_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0206311 6.71517 0.638459 0.22937 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis