Hb_015978_040

Information

Type -
Description -
Location Contig15978: 19176-19637
Sequence    

Annotation

kegg
ID rcu:RCOM_1347410
description hypothetical protein
nr
ID XP_012082877.1
description PREDICTED: uncharacterized protein LOC105642609 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8Y0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14015 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14214: 17331-36302
cDNA
(Sanger)
(ID:Location)		 028_P12.ab1: 19005-19722 , 044_A18.ab1: 18960-19722

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015978_040 0.0 - - PREDICTED: uncharacterized protein LOC105642609 [Jatropha curcas]
2 Hb_005725_180 0.0644475403 - - -
3 Hb_034132_010 0.0670775071 - - hypothetical protein B456_007G015400 [Gossypium raimondii]
4 Hb_022768_010 0.0708147337 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
5 Hb_032966_010 0.0710871111 - - receptor serine/threonine kinase, putative [Ricinus communis]
6 Hb_001565_050 0.0712218131 - - PREDICTED: receptor-like protein kinase 5 [Eucalyptus grandis]
7 Hb_005843_070 0.0724866685 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
8 Hb_005843_080 0.0807009892 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
9 Hb_005946_190 0.0808872419 - - hypothetical protein EUGRSUZ_C01051 [Eucalyptus grandis]
10 Hb_012691_040 0.0827783938 - - PREDICTED: cytochrome P450 81E8-like [Fragaria vesca subsp. vesca]
11 Hb_001514_110 0.0845110107 - - conserved hypothetical protein [Ricinus communis]
12 Hb_142691_010 0.0893836378 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
13 Hb_000086_600 0.0915878456 - - -
14 Hb_106810_010 0.0918256224 - - receptor serine/threonine kinase, putative [Ricinus communis]
15 Hb_117602_010 0.096976267 - - dimethylaniline monooxygenase, putative [Ricinus communis]
16 Hb_008579_010 0.1010911708 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
17 Hb_004117_360 0.1030763945 - - hypothetical protein JCGZ_00367 [Jatropha curcas]
18 Hb_004157_080 0.1041446315 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
19 Hb_147137_020 0.1058708797 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
20 Hb_002486_030 0.106817798 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_015978_040 Hb_015978_040 Hb_005725_180 Hb_005725_180 Hb_015978_040--Hb_005725_180 Hb_034132_010 Hb_034132_010 Hb_015978_040--Hb_034132_010 Hb_022768_010 Hb_022768_010 Hb_015978_040--Hb_022768_010 Hb_032966_010 Hb_032966_010 Hb_015978_040--Hb_032966_010 Hb_001565_050 Hb_001565_050 Hb_015978_040--Hb_001565_050 Hb_005843_070 Hb_005843_070 Hb_015978_040--Hb_005843_070 Hb_005725_180--Hb_005843_070 Hb_001514_110 Hb_001514_110 Hb_005725_180--Hb_001514_110 Hb_012691_040 Hb_012691_040 Hb_005725_180--Hb_012691_040 Hb_004117_360 Hb_004117_360 Hb_005725_180--Hb_004117_360 Hb_111908_010 Hb_111908_010 Hb_005725_180--Hb_111908_010 Hb_034132_010--Hb_001565_050 Hb_034132_010--Hb_022768_010 Hb_117602_010 Hb_117602_010 Hb_034132_010--Hb_117602_010 Hb_005843_080 Hb_005843_080 Hb_034132_010--Hb_005843_080 Hb_034132_010--Hb_005725_180 Hb_031862_150 Hb_031862_150 Hb_022768_010--Hb_031862_150 Hb_022768_010--Hb_001565_050 Hb_005946_190 Hb_005946_190 Hb_022768_010--Hb_005946_190 Hb_022768_010--Hb_005725_180 Hb_106810_010 Hb_106810_010 Hb_032966_010--Hb_106810_010 Hb_032966_010--Hb_034132_010 Hb_116352_010 Hb_116352_010 Hb_032966_010--Hb_116352_010 Hb_032966_010--Hb_005843_070 Hb_032966_010--Hb_005725_180 Hb_142691_010 Hb_142691_010 Hb_001565_050--Hb_142691_010 Hb_001565_050--Hb_012691_040 Hb_008579_010 Hb_008579_010 Hb_001565_050--Hb_008579_010 Hb_001565_050--Hb_001514_110 Hb_005843_070--Hb_001514_110 Hb_005843_070--Hb_005946_190 Hb_005843_070--Hb_111908_010 Hb_005843_070--Hb_012691_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.317128 1760.59 356.837 99.4005 0 0.0587988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.459958 0.963464 0 1.11064 1.76732

CAGE analysis