Hb_116352_010

Information

Type -
Description -
Location Contig116352: 12054-13561
Sequence    

Annotation

kegg
ID rcu:RCOM_0574920
description kinase, putative (EC:2.7.10.1)
nr
ID XP_002529764.1
description kinase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SUU5
description Kinase, putative OS=Ricinus communis GN=RCOM_0574920 PE=3 SV=1
Gene Ontology
ID GO:0030247
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116352_010 0.0 - - kinase, putative [Ricinus communis]
2 Hb_020367_010 0.0844591679 - - hypothetical protein PRUPE_ppa004271mg [Prunus persica]
3 Hb_032966_010 0.1021800491 - - receptor serine/threonine kinase, putative [Ricinus communis]
4 Hb_004712_100 0.1125773061 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
5 Hb_001198_070 0.1128826387 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011671_300 0.1129120747 - - 14.3 kDa oleosin [Jatropha curcas]
7 Hb_000120_140 0.1129963395 - - hypothetical protein POPTR_0009s05160g [Populus trichocarpa]
8 Hb_000264_200 0.1130217818 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
9 Hb_000522_100 0.1133259773 - - PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Nelumbo nucifera]
10 Hb_002232_330 0.113351125 - - -
11 Hb_025248_030 0.1135652038 - - hypothetical protein JCGZ_09377 [Jatropha curcas]
12 Hb_008637_010 0.1138182798 - - Major latex protein, putative [Ricinus communis]
13 Hb_001373_120 0.114540843 - - Uncharacterized protein TCM_031358 [Theobroma cacao]
14 Hb_005171_030 0.1152754532 - - hypothetical protein EUGRSUZ_H02434 [Eucalyptus grandis]
15 Hb_129319_010 0.1153202345 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
16 Hb_005417_020 0.1153615513 - - -
17 Hb_003766_030 0.1154414698 - - PREDICTED: nuclear transport factor 2-like [Gossypium raimondii]
18 Hb_000629_050 0.1155219479 - - -
19 Hb_011903_030 0.1159798129 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Populus euphratica]
20 Hb_001515_040 0.1163895803 - - -

Gene co-expression network

sample Hb_116352_010 Hb_116352_010 Hb_020367_010 Hb_020367_010 Hb_116352_010--Hb_020367_010 Hb_032966_010 Hb_032966_010 Hb_116352_010--Hb_032966_010 Hb_004712_100 Hb_004712_100 Hb_116352_010--Hb_004712_100 Hb_001198_070 Hb_001198_070 Hb_116352_010--Hb_001198_070 Hb_011671_300 Hb_011671_300 Hb_116352_010--Hb_011671_300 Hb_000120_140 Hb_000120_140 Hb_116352_010--Hb_000120_140 Hb_001515_040 Hb_001515_040 Hb_020367_010--Hb_001515_040 Hb_101437_010 Hb_101437_010 Hb_020367_010--Hb_101437_010 Hb_048635_010 Hb_048635_010 Hb_020367_010--Hb_048635_010 Hb_002192_060 Hb_002192_060 Hb_020367_010--Hb_002192_060 Hb_000742_050 Hb_000742_050 Hb_020367_010--Hb_000742_050 Hb_015978_040 Hb_015978_040 Hb_032966_010--Hb_015978_040 Hb_106810_010 Hb_106810_010 Hb_032966_010--Hb_106810_010 Hb_034132_010 Hb_034132_010 Hb_032966_010--Hb_034132_010 Hb_005843_070 Hb_005843_070 Hb_032966_010--Hb_005843_070 Hb_005725_180 Hb_005725_180 Hb_032966_010--Hb_005725_180 Hb_004712_100--Hb_001198_070 Hb_000522_100 Hb_000522_100 Hb_004712_100--Hb_000522_100 Hb_002232_330 Hb_002232_330 Hb_004712_100--Hb_002232_330 Hb_025248_030 Hb_025248_030 Hb_004712_100--Hb_025248_030 Hb_004712_100--Hb_011671_300 Hb_004712_100--Hb_000120_140 Hb_001198_070--Hb_000522_100 Hb_001198_070--Hb_002232_330 Hb_001198_070--Hb_025248_030 Hb_005171_030 Hb_005171_030 Hb_001198_070--Hb_005171_030 Hb_129319_010 Hb_129319_010 Hb_001198_070--Hb_129319_010 Hb_011671_300--Hb_000120_140 Hb_000264_200 Hb_000264_200 Hb_011671_300--Hb_000264_200 Hb_008637_010 Hb_008637_010 Hb_011671_300--Hb_008637_010 Hb_001373_120 Hb_001373_120 Hb_011671_300--Hb_001373_120 Hb_003766_030 Hb_003766_030 Hb_011671_300--Hb_003766_030 Hb_000120_140--Hb_000264_200 Hb_000120_140--Hb_008637_010 Hb_000120_140--Hb_001373_120 Hb_000120_140--Hb_003766_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.62579 0.679306 0.0409507 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0183573 0

CAGE analysis