Hb_000522_100

Information

Type -
Description -
Location Contig522: 76450-78027
Sequence    

Annotation

kegg
ID rcu:RCOM_0492090
description DNA repair helicase rad5,16, putative (EC:2.7.11.1)
nr
ID XP_010274821.1
description PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Nelumbo nucifera]
swissprot
ID Q9FIY7
description Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 OS=Arabidopsis thaliana GN=At5g43530 PE=3 SV=1
trembl
ID B9STJ2
description DNA repair helicase rad5,16, putative OS=Ricinus communis GN=RCOM_0492090 PE=4 SV=1
Gene Ontology
ID GO:0005488
description swi snf-related matrix-associated actin-dependent regulator of chromatin subfamily a member 3-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000522_100 0.0 - - PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Nelumbo nucifera]
2 Hb_002232_330 0.0002087613 - - -
3 Hb_025248_030 0.0018749075 - - hypothetical protein JCGZ_09377 [Jatropha curcas]
4 Hb_001198_070 0.0044083292 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004712_100 0.0095908618 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
6 Hb_005171_030 0.0115707346 - - hypothetical protein EUGRSUZ_H02434 [Eucalyptus grandis]
7 Hb_129319_010 0.0117767166 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
8 Hb_005417_020 0.0119653696 - - -
9 Hb_000629_050 0.0126856036 - - -
10 Hb_011903_030 0.0146462611 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Populus euphratica]
11 Hb_039385_010 0.0169025992 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_000742_050 0.0202441416 - - hypothetical protein CL1373Contig1_03, partial [Pinus lambertiana]
13 Hb_011671_300 0.0233977833 - - 14.3 kDa oleosin [Jatropha curcas]
14 Hb_000120_140 0.0243475244 - - hypothetical protein POPTR_0009s05160g [Populus trichocarpa]
15 Hb_000264_200 0.0246181422 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
16 Hb_008637_010 0.0310909991 - - Major latex protein, putative [Ricinus communis]
17 Hb_001373_120 0.0353720958 - - Uncharacterized protein TCM_031358 [Theobroma cacao]
18 Hb_003766_030 0.0397677413 - - PREDICTED: nuclear transport factor 2-like [Gossypium raimondii]
19 Hb_048635_010 0.0561416709 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_002192_060 0.0583258925 - - -

Gene co-expression network

sample Hb_000522_100 Hb_000522_100 Hb_002232_330 Hb_002232_330 Hb_000522_100--Hb_002232_330 Hb_025248_030 Hb_025248_030 Hb_000522_100--Hb_025248_030 Hb_001198_070 Hb_001198_070 Hb_000522_100--Hb_001198_070 Hb_004712_100 Hb_004712_100 Hb_000522_100--Hb_004712_100 Hb_005171_030 Hb_005171_030 Hb_000522_100--Hb_005171_030 Hb_129319_010 Hb_129319_010 Hb_000522_100--Hb_129319_010 Hb_002232_330--Hb_025248_030 Hb_002232_330--Hb_001198_070 Hb_002232_330--Hb_004712_100 Hb_002232_330--Hb_005171_030 Hb_002232_330--Hb_129319_010 Hb_025248_030--Hb_001198_070 Hb_025248_030--Hb_005171_030 Hb_025248_030--Hb_129319_010 Hb_005417_020 Hb_005417_020 Hb_025248_030--Hb_005417_020 Hb_001198_070--Hb_004712_100 Hb_001198_070--Hb_005171_030 Hb_001198_070--Hb_129319_010 Hb_004712_100--Hb_025248_030 Hb_011671_300 Hb_011671_300 Hb_004712_100--Hb_011671_300 Hb_000120_140 Hb_000120_140 Hb_004712_100--Hb_000120_140 Hb_005171_030--Hb_129319_010 Hb_005171_030--Hb_005417_020 Hb_000629_050 Hb_000629_050 Hb_005171_030--Hb_000629_050 Hb_011903_030 Hb_011903_030 Hb_005171_030--Hb_011903_030 Hb_039385_010 Hb_039385_010 Hb_005171_030--Hb_039385_010 Hb_000742_050 Hb_000742_050 Hb_005171_030--Hb_000742_050 Hb_129319_010--Hb_005417_020 Hb_129319_010--Hb_000629_050 Hb_129319_010--Hb_011903_030 Hb_129319_010--Hb_039385_010 Hb_129319_010--Hb_000742_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.116622 0.0522826 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis