Hb_002232_330

Information

Type -
Description -
Location Contig2232: 244447-249233
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID Q2QTB4
description Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g20230 PE=4 SV=1
Gene Ontology
ID GO:0006812
description sodium transporter hkt1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23127: 250135-257969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_330 0.0 - - -
2 Hb_000522_100 0.0002087613 - - PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Nelumbo nucifera]
3 Hb_025248_030 0.0016661465 - - hypothetical protein JCGZ_09377 [Jatropha curcas]
4 Hb_001198_070 0.0046170885 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004712_100 0.0097996139 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
6 Hb_005171_030 0.0113619859 - - hypothetical protein EUGRSUZ_H02434 [Eucalyptus grandis]
7 Hb_129319_010 0.0115679684 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
8 Hb_005417_020 0.0117566218 - - -
9 Hb_000629_050 0.0124768575 - - -
10 Hb_011903_030 0.01443752 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Populus euphratica]
11 Hb_039385_010 0.0166938647 - - nucleic acid binding protein, putative [Ricinus communis]
12 Hb_000742_050 0.0200354187 - - hypothetical protein CL1373Contig1_03, partial [Pinus lambertiana]
13 Hb_011671_300 0.0236064896 - - 14.3 kDa oleosin [Jatropha curcas]
14 Hb_000120_140 0.0245562261 - - hypothetical protein POPTR_0009s05160g [Populus trichocarpa]
15 Hb_000264_200 0.0248268426 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
16 Hb_008637_010 0.0312996626 - - Major latex protein, putative [Ricinus communis]
17 Hb_001373_120 0.03558073 - - Uncharacterized protein TCM_031358 [Theobroma cacao]
18 Hb_003766_030 0.0399763412 - - PREDICTED: nuclear transport factor 2-like [Gossypium raimondii]
19 Hb_048635_010 0.055933196 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_002192_060 0.0581174397 - - -

Gene co-expression network

sample Hb_002232_330 Hb_002232_330 Hb_000522_100 Hb_000522_100 Hb_002232_330--Hb_000522_100 Hb_025248_030 Hb_025248_030 Hb_002232_330--Hb_025248_030 Hb_001198_070 Hb_001198_070 Hb_002232_330--Hb_001198_070 Hb_004712_100 Hb_004712_100 Hb_002232_330--Hb_004712_100 Hb_005171_030 Hb_005171_030 Hb_002232_330--Hb_005171_030 Hb_129319_010 Hb_129319_010 Hb_002232_330--Hb_129319_010 Hb_000522_100--Hb_025248_030 Hb_000522_100--Hb_001198_070 Hb_000522_100--Hb_004712_100 Hb_000522_100--Hb_005171_030 Hb_000522_100--Hb_129319_010 Hb_025248_030--Hb_001198_070 Hb_025248_030--Hb_005171_030 Hb_025248_030--Hb_129319_010 Hb_005417_020 Hb_005417_020 Hb_025248_030--Hb_005417_020 Hb_001198_070--Hb_004712_100 Hb_001198_070--Hb_005171_030 Hb_001198_070--Hb_129319_010 Hb_004712_100--Hb_025248_030 Hb_011671_300 Hb_011671_300 Hb_004712_100--Hb_011671_300 Hb_000120_140 Hb_000120_140 Hb_004712_100--Hb_000120_140 Hb_005171_030--Hb_129319_010 Hb_005171_030--Hb_005417_020 Hb_000629_050 Hb_000629_050 Hb_005171_030--Hb_000629_050 Hb_011903_030 Hb_011903_030 Hb_005171_030--Hb_011903_030 Hb_039385_010 Hb_039385_010 Hb_005171_030--Hb_039385_010 Hb_000742_050 Hb_000742_050 Hb_005171_030--Hb_000742_050 Hb_129319_010--Hb_005417_020 Hb_129319_010--Hb_000629_050 Hb_129319_010--Hb_011903_030 Hb_129319_010--Hb_039385_010 Hb_129319_010--Hb_000742_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0766418 0.0343957 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis