Hb_039385_010

Information

Type -
Description -
Location Contig39385: 1468-1816
Sequence    

Annotation

kegg
ID rcu:RCOM_0220230
description nucleic acid binding protein, putative
nr
ID XP_002524436.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID B9SEL7
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0220230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039385_010 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_011903_030 0.0022565885 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Populus euphratica]
3 Hb_000742_050 0.0033420522 - - hypothetical protein CL1373Contig1_03, partial [Pinus lambertiana]
4 Hb_000629_050 0.0042174019 - - -
5 Hb_005417_020 0.0049376787 - - -
6 Hb_129319_010 0.0051263415 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
7 Hb_005171_030 0.0053323338 - - hypothetical protein EUGRSUZ_H02434 [Eucalyptus grandis]
8 Hb_025248_030 0.0150279082 - - hypothetical protein JCGZ_09377 [Jatropha curcas]
9 Hb_002232_330 0.0166938647 - - -
10 Hb_000522_100 0.0169025992 - - PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Nelumbo nucifera]
11 Hb_001198_070 0.0213102015 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004712_100 0.0264914837 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
13 Hb_048635_010 0.0392550791 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_011671_300 0.0402929305 - - 14.3 kDa oleosin [Jatropha curcas]
15 Hb_000120_140 0.0412421778 - - hypothetical protein POPTR_0009s05160g [Populus trichocarpa]
16 Hb_002192_060 0.0414408119 - - -
17 Hb_000264_200 0.0415126521 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
18 Hb_008637_010 0.0479817019 - - Major latex protein, putative [Ricinus communis]
19 Hb_001373_120 0.0522598805 - - Uncharacterized protein TCM_031358 [Theobroma cacao]
20 Hb_003766_030 0.0566521923 - - PREDICTED: nuclear transport factor 2-like [Gossypium raimondii]

Gene co-expression network

sample Hb_039385_010 Hb_039385_010 Hb_011903_030 Hb_011903_030 Hb_039385_010--Hb_011903_030 Hb_000742_050 Hb_000742_050 Hb_039385_010--Hb_000742_050 Hb_000629_050 Hb_000629_050 Hb_039385_010--Hb_000629_050 Hb_005417_020 Hb_005417_020 Hb_039385_010--Hb_005417_020 Hb_129319_010 Hb_129319_010 Hb_039385_010--Hb_129319_010 Hb_005171_030 Hb_005171_030 Hb_039385_010--Hb_005171_030 Hb_011903_030--Hb_000629_050 Hb_011903_030--Hb_005417_020 Hb_011903_030--Hb_129319_010 Hb_011903_030--Hb_005171_030 Hb_011903_030--Hb_000742_050 Hb_000742_050--Hb_000629_050 Hb_000742_050--Hb_005417_020 Hb_000742_050--Hb_129319_010 Hb_000742_050--Hb_005171_030 Hb_000629_050--Hb_005417_020 Hb_000629_050--Hb_129319_010 Hb_000629_050--Hb_005171_030 Hb_005417_020--Hb_129319_010 Hb_005417_020--Hb_005171_030 Hb_129319_010--Hb_005171_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.237827 0.116128 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis