Hb_004712_100

Information

Type -
Description -
Location Contig4712: 59914-60931
Sequence    

Annotation

kegg
ID cic:CICLE_v10003434mg
description hypothetical protein
nr
ID XP_006432547.1
description hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4SYA9
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10003434mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004712_100 0.0 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
2 Hb_001198_070 0.005182636 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000522_100 0.0095908618 - - PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Nelumbo nucifera]
4 Hb_002232_330 0.0097996139 - - -
5 Hb_025248_030 0.0114656728 - - hypothetical protein JCGZ_09377 [Jatropha curcas]
6 Hb_011671_300 0.0138084162 - - 14.3 kDa oleosin [Jatropha curcas]
7 Hb_000120_140 0.0147583268 - - hypothetical protein POPTR_0009s05160g [Populus trichocarpa]
8 Hb_000264_200 0.0150289945 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
9 Hb_005171_030 0.0211605087 - - hypothetical protein EUGRSUZ_H02434 [Eucalyptus grandis]
10 Hb_129319_010 0.0213664609 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
11 Hb_008637_010 0.0215032588 - - Major latex protein, putative [Ricinus communis]
12 Hb_005417_020 0.0215550862 - - -
13 Hb_000629_050 0.0222752118 - - -
14 Hb_011903_030 0.0242355516 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Populus euphratica]
15 Hb_001373_120 0.0257855147 - - Uncharacterized protein TCM_031358 [Theobroma cacao]
16 Hb_039385_010 0.0264914837 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_000742_050 0.0298323465 - - hypothetical protein CL1373Contig1_03, partial [Pinus lambertiana]
18 Hb_003766_030 0.0301825432 - - PREDICTED: nuclear transport factor 2-like [Gossypium raimondii]
19 Hb_132148_010 0.0556918455 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
20 Hb_002582_090 0.0653652967 - - PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum]

Gene co-expression network

sample Hb_004712_100 Hb_004712_100 Hb_001198_070 Hb_001198_070 Hb_004712_100--Hb_001198_070 Hb_000522_100 Hb_000522_100 Hb_004712_100--Hb_000522_100 Hb_002232_330 Hb_002232_330 Hb_004712_100--Hb_002232_330 Hb_025248_030 Hb_025248_030 Hb_004712_100--Hb_025248_030 Hb_011671_300 Hb_011671_300 Hb_004712_100--Hb_011671_300 Hb_000120_140 Hb_000120_140 Hb_004712_100--Hb_000120_140 Hb_001198_070--Hb_000522_100 Hb_001198_070--Hb_002232_330 Hb_001198_070--Hb_025248_030 Hb_005171_030 Hb_005171_030 Hb_001198_070--Hb_005171_030 Hb_129319_010 Hb_129319_010 Hb_001198_070--Hb_129319_010 Hb_000522_100--Hb_002232_330 Hb_000522_100--Hb_025248_030 Hb_000522_100--Hb_005171_030 Hb_000522_100--Hb_129319_010 Hb_002232_330--Hb_025248_030 Hb_002232_330--Hb_005171_030 Hb_002232_330--Hb_129319_010 Hb_025248_030--Hb_005171_030 Hb_025248_030--Hb_129319_010 Hb_005417_020 Hb_005417_020 Hb_025248_030--Hb_005417_020 Hb_011671_300--Hb_000120_140 Hb_000264_200 Hb_000264_200 Hb_011671_300--Hb_000264_200 Hb_008637_010 Hb_008637_010 Hb_011671_300--Hb_008637_010 Hb_001373_120 Hb_001373_120 Hb_011671_300--Hb_001373_120 Hb_003766_030 Hb_003766_030 Hb_011671_300--Hb_003766_030 Hb_000120_140--Hb_000264_200 Hb_000120_140--Hb_008637_010 Hb_000120_140--Hb_001373_120 Hb_000120_140--Hb_003766_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.149539 0.0638283 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis