Hb_003766_030

Information

Type -
Description -
Location Contig3766: 14304-14765
Sequence    

Annotation

kegg
ID tcc:TCM_008734
description Nuclear transport factor 2B
nr
ID XP_012440591.1
description PREDICTED: nuclear transport factor 2-like [Gossypium raimondii]
swissprot
ID Q9C7F5
description Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=1 SV=1
trembl
ID A0A0D2TVZ9
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G332400 PE=4 SV=1
Gene Ontology
ID GO:0005622
description nuclear transport factor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003766_030 0.0 - - PREDICTED: nuclear transport factor 2-like [Gossypium raimondii]
2 Hb_001373_120 0.0043987895 - - Uncharacterized protein TCM_031358 [Theobroma cacao]
3 Hb_008637_010 0.0086821671 - - Major latex protein, putative [Ricinus communis]
4 Hb_000264_200 0.015157037 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
5 Hb_000120_140 0.0154277019 - - hypothetical protein POPTR_0009s05160g [Populus trichocarpa]
6 Hb_011671_300 0.0163775848 - - 14.3 kDa oleosin [Jatropha curcas]
7 Hb_132148_010 0.0255322685 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
8 Hb_004712_100 0.0301825432 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
9 Hb_002582_090 0.0352204274 - - PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum]
10 Hb_001198_070 0.0353624429 - - conserved hypothetical protein [Ricinus communis]
11 Hb_048826_010 0.0378829993 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB28-like [Jatropha curcas]
12 Hb_000522_100 0.0397677413 - - PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Nelumbo nucifera]
13 Hb_002232_330 0.0399763412 - - -
14 Hb_025248_030 0.0416411424 - - hypothetical protein JCGZ_09377 [Jatropha curcas]
15 Hb_000672_070 0.0489597931 - - PREDICTED: uncharacterized protein LOC105631678 [Jatropha curcas]
16 Hb_005171_030 0.0513271491 - - hypothetical protein EUGRSUZ_H02434 [Eucalyptus grandis]
17 Hb_129319_010 0.0515328862 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
18 Hb_005417_020 0.0517213134 - - -
19 Hb_000629_050 0.0524406742 - - -
20 Hb_011903_030 0.0543988622 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Populus euphratica]

Gene co-expression network

sample Hb_003766_030 Hb_003766_030 Hb_001373_120 Hb_001373_120 Hb_003766_030--Hb_001373_120 Hb_008637_010 Hb_008637_010 Hb_003766_030--Hb_008637_010 Hb_000264_200 Hb_000264_200 Hb_003766_030--Hb_000264_200 Hb_000120_140 Hb_000120_140 Hb_003766_030--Hb_000120_140 Hb_011671_300 Hb_011671_300 Hb_003766_030--Hb_011671_300 Hb_132148_010 Hb_132148_010 Hb_003766_030--Hb_132148_010 Hb_001373_120--Hb_008637_010 Hb_001373_120--Hb_000264_200 Hb_001373_120--Hb_000120_140 Hb_001373_120--Hb_011671_300 Hb_004712_100 Hb_004712_100 Hb_001373_120--Hb_004712_100 Hb_008637_010--Hb_000264_200 Hb_008637_010--Hb_000120_140 Hb_008637_010--Hb_011671_300 Hb_008637_010--Hb_004712_100 Hb_000264_200--Hb_000120_140 Hb_000264_200--Hb_011671_300 Hb_000264_200--Hb_004712_100 Hb_000120_140--Hb_011671_300 Hb_000120_140--Hb_004712_100 Hb_011671_300--Hb_004712_100 Hb_002582_090 Hb_002582_090 Hb_132148_010--Hb_002582_090 Hb_048826_010 Hb_048826_010 Hb_132148_010--Hb_048826_010 Hb_000672_070 Hb_000672_070 Hb_132148_010--Hb_000672_070 Hb_132148_010--Hb_001373_120 Hb_101733_020 Hb_101733_020 Hb_132148_010--Hb_101733_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.350462 0.127745 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis