Hb_002582_090

Information

Type -
Description -
Location Contig2582: 144068-144668
Sequence    

Annotation

kegg
ID atr:s00025p00241040
description AMTR_s00025p00241040; hypothetical protein
nr
ID XP_011090469.1
description PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum]
swissprot
ID -
description -
trembl
ID K3Z2A4
description Uncharacterized protein OS=Setaria italica GN=Si020672m.g PE=4 SV=1
Gene Ontology
ID GO:0016616
description cinnamoyl- reductase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002582_090 0.0 - - PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum]
2 Hb_048826_010 0.0026646969 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB28-like [Jatropha curcas]
3 Hb_132148_010 0.0096932743 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
4 Hb_000672_070 0.0137537784 - - PREDICTED: uncharacterized protein LOC105631678 [Jatropha curcas]
5 Hb_101733_020 0.0229772808 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Jatropha curcas]
6 Hb_081445_010 0.0235837407 - - hypothetical protein JCGZ_04541 [Jatropha curcas]
7 Hb_003766_030 0.0352204274 - - PREDICTED: nuclear transport factor 2-like [Gossypium raimondii]
8 Hb_001373_120 0.0396157674 - - Uncharacterized protein TCM_031358 [Theobroma cacao]
9 Hb_067197_020 0.0437171481 - - -
10 Hb_008637_010 0.0438950961 - - Major latex protein, putative [Ricinus communis]
11 Hb_000264_200 0.0503625811 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
12 Hb_000120_140 0.0506329047 - - hypothetical protein POPTR_0009s05160g [Populus trichocarpa]
13 Hb_011671_300 0.0515815692 - - 14.3 kDa oleosin [Jatropha curcas]
14 Hb_010896_010 0.0548357693 - - -
15 Hb_001268_360 0.061909361 - - PREDICTED: uncharacterized protein LOC104447679 [Eucalyptus grandis]
16 Hb_004712_100 0.0653652967 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
17 Hb_001198_070 0.0705355756 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002127_010 0.0710372056 - - Aluminum activated malate transporter family protein, putative [Theobroma cacao]
19 Hb_000522_100 0.0749320042 - - PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Nelumbo nucifera]
20 Hb_002232_330 0.0751401687 - - -

Gene co-expression network

sample Hb_002582_090 Hb_002582_090 Hb_048826_010 Hb_048826_010 Hb_002582_090--Hb_048826_010 Hb_132148_010 Hb_132148_010 Hb_002582_090--Hb_132148_010 Hb_000672_070 Hb_000672_070 Hb_002582_090--Hb_000672_070 Hb_101733_020 Hb_101733_020 Hb_002582_090--Hb_101733_020 Hb_081445_010 Hb_081445_010 Hb_002582_090--Hb_081445_010 Hb_003766_030 Hb_003766_030 Hb_002582_090--Hb_003766_030 Hb_048826_010--Hb_000672_070 Hb_048826_010--Hb_132148_010 Hb_048826_010--Hb_101733_020 Hb_048826_010--Hb_081445_010 Hb_048826_010--Hb_003766_030 Hb_132148_010--Hb_000672_070 Hb_132148_010--Hb_003766_030 Hb_001373_120 Hb_001373_120 Hb_132148_010--Hb_001373_120 Hb_132148_010--Hb_101733_020 Hb_000672_070--Hb_101733_020 Hb_000672_070--Hb_081445_010 Hb_067197_020 Hb_067197_020 Hb_000672_070--Hb_067197_020 Hb_101733_020--Hb_081445_010 Hb_101733_020--Hb_067197_020 Hb_010896_010 Hb_010896_010 Hb_101733_020--Hb_010896_010 Hb_081445_010--Hb_067197_020 Hb_081445_010--Hb_010896_010 Hb_003766_030--Hb_001373_120 Hb_008637_010 Hb_008637_010 Hb_003766_030--Hb_008637_010 Hb_000264_200 Hb_000264_200 Hb_003766_030--Hb_000264_200 Hb_000120_140 Hb_000120_140 Hb_003766_030--Hb_000120_140 Hb_011671_300 Hb_011671_300 Hb_003766_030--Hb_011671_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.77736 0.233867 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis