Hb_001373_120

Information

Type -
Description -
Location Contig1373: 94554-95888
Sequence    

Annotation

kegg
ID fve:101307504
description F-box protein CPR30-like
nr
ID XP_007021319.1
description Uncharacterized protein TCM_031358 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FED2
description Uncharacterized protein OS=Theobroma cacao GN=TCM_031358 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein cpr30-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001373_120 0.0 - - Uncharacterized protein TCM_031358 [Theobroma cacao]
2 Hb_008637_010 0.0042834642 - - Major latex protein, putative [Ricinus communis]
3 Hb_003766_030 0.0043987895 - - PREDICTED: nuclear transport factor 2-like [Gossypium raimondii]
4 Hb_000264_200 0.0107586238 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
5 Hb_000120_140 0.0110293049 - - hypothetical protein POPTR_0009s05160g [Populus trichocarpa]
6 Hb_011671_300 0.0119792473 - - 14.3 kDa oleosin [Jatropha curcas]
7 Hb_004712_100 0.0257855147 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
8 Hb_132148_010 0.0299291943 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
9 Hb_001198_070 0.0309661147 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000522_100 0.0353720958 - - PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Nelumbo nucifera]
11 Hb_002232_330 0.03558073 - - -
12 Hb_025248_030 0.0372458111 - - hypothetical protein JCGZ_09377 [Jatropha curcas]
13 Hb_002582_090 0.0396157674 - - PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum]
14 Hb_048826_010 0.0422778143 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB28-like [Jatropha curcas]
15 Hb_005171_030 0.0469336655 - - hypothetical protein EUGRSUZ_H02434 [Eucalyptus grandis]
16 Hb_129319_010 0.0471394458 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
17 Hb_005417_020 0.0473279128 - - -
18 Hb_000629_050 0.0480474266 - - -
19 Hb_011903_030 0.0500060412 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Populus euphratica]
20 Hb_039385_010 0.0522598805 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001373_120 Hb_001373_120 Hb_008637_010 Hb_008637_010 Hb_001373_120--Hb_008637_010 Hb_003766_030 Hb_003766_030 Hb_001373_120--Hb_003766_030 Hb_000264_200 Hb_000264_200 Hb_001373_120--Hb_000264_200 Hb_000120_140 Hb_000120_140 Hb_001373_120--Hb_000120_140 Hb_011671_300 Hb_011671_300 Hb_001373_120--Hb_011671_300 Hb_004712_100 Hb_004712_100 Hb_001373_120--Hb_004712_100 Hb_008637_010--Hb_000264_200 Hb_008637_010--Hb_000120_140 Hb_008637_010--Hb_011671_300 Hb_008637_010--Hb_003766_030 Hb_008637_010--Hb_004712_100 Hb_003766_030--Hb_000264_200 Hb_003766_030--Hb_000120_140 Hb_003766_030--Hb_011671_300 Hb_132148_010 Hb_132148_010 Hb_003766_030--Hb_132148_010 Hb_000264_200--Hb_000120_140 Hb_000264_200--Hb_011671_300 Hb_000264_200--Hb_004712_100 Hb_000120_140--Hb_011671_300 Hb_000120_140--Hb_004712_100 Hb_011671_300--Hb_004712_100 Hb_001198_070 Hb_001198_070 Hb_004712_100--Hb_001198_070 Hb_000522_100 Hb_000522_100 Hb_004712_100--Hb_000522_100 Hb_002232_330 Hb_002232_330 Hb_004712_100--Hb_002232_330 Hb_025248_030 Hb_025248_030 Hb_004712_100--Hb_025248_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0507495 0.0189354 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis