Hb_000120_140

Information

Type -
Description -
Location Contig120: 87172-88148
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05160g
description POPTRDRAFT_768063; hypothetical protein
nr
ID XP_002313377.2
description hypothetical protein POPTR_0009s05160g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HP29
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s05160g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_140 0.0 - - hypothetical protein POPTR_0009s05160g [Populus trichocarpa]
2 Hb_000264_200 0.0002706976 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
3 Hb_011671_300 0.0009500068 - - 14.3 kDa oleosin [Jatropha curcas]
4 Hb_008637_010 0.006746006 - - Major latex protein, putative [Ricinus communis]
5 Hb_001373_120 0.0110293049 - - Uncharacterized protein TCM_031358 [Theobroma cacao]
6 Hb_004712_100 0.0147583268 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
7 Hb_003766_030 0.0154277019 - - PREDICTED: nuclear transport factor 2-like [Gossypium raimondii]
8 Hb_001198_070 0.0199402223 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000522_100 0.0243475244 - - PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Nelumbo nucifera]
10 Hb_002232_330 0.0245562261 - - -
11 Hb_025248_030 0.0262218617 - - hypothetical protein JCGZ_09377 [Jatropha curcas]
12 Hb_005171_030 0.0359134933 - - hypothetical protein EUGRSUZ_H02434 [Eucalyptus grandis]
13 Hb_129319_010 0.0361193639 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
14 Hb_005417_020 0.0363079139 - - -
15 Hb_000629_050 0.037027748 - - -
16 Hb_011903_030 0.03898726 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Populus euphratica]
17 Hb_132148_010 0.0409511627 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
18 Hb_039385_010 0.0412421778 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_000742_050 0.0445814181 - - hypothetical protein CL1373Contig1_03, partial [Pinus lambertiana]
20 Hb_002582_090 0.0506329047 - - PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum]

Gene co-expression network

sample Hb_000120_140 Hb_000120_140 Hb_000264_200 Hb_000264_200 Hb_000120_140--Hb_000264_200 Hb_011671_300 Hb_011671_300 Hb_000120_140--Hb_011671_300 Hb_008637_010 Hb_008637_010 Hb_000120_140--Hb_008637_010 Hb_001373_120 Hb_001373_120 Hb_000120_140--Hb_001373_120 Hb_004712_100 Hb_004712_100 Hb_000120_140--Hb_004712_100 Hb_003766_030 Hb_003766_030 Hb_000120_140--Hb_003766_030 Hb_000264_200--Hb_011671_300 Hb_000264_200--Hb_008637_010 Hb_000264_200--Hb_001373_120 Hb_000264_200--Hb_004712_100 Hb_000264_200--Hb_003766_030 Hb_011671_300--Hb_008637_010 Hb_011671_300--Hb_001373_120 Hb_011671_300--Hb_004712_100 Hb_011671_300--Hb_003766_030 Hb_008637_010--Hb_001373_120 Hb_008637_010--Hb_003766_030 Hb_008637_010--Hb_004712_100 Hb_001373_120--Hb_003766_030 Hb_001373_120--Hb_004712_100 Hb_001198_070 Hb_001198_070 Hb_004712_100--Hb_001198_070 Hb_000522_100 Hb_000522_100 Hb_004712_100--Hb_000522_100 Hb_002232_330 Hb_002232_330 Hb_004712_100--Hb_002232_330 Hb_025248_030 Hb_025248_030 Hb_004712_100--Hb_025248_030 Hb_132148_010 Hb_132148_010 Hb_003766_030--Hb_132148_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.150103 0.0593504 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis