Hb_008637_010

Information

Type -
Description -
Location Contig8637: 17647-17986
Sequence    

Annotation

kegg
ID rcu:RCOM_2143600
description Major latex protein, putative
nr
ID XP_002535412.1
description Major latex protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9TAZ3
description Major latex protein, putative OS=Ricinus communis GN=RCOM_2143600 PE=4 SV=1
Gene Ontology
ID GO:0050896
description major latex

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60861: 17381-17695 , PASA_asmbl_60862: 16942-18420
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008637_010 0.0 - - Major latex protein, putative [Ricinus communis]
2 Hb_001373_120 0.0042834642 - - Uncharacterized protein TCM_031358 [Theobroma cacao]
3 Hb_000264_200 0.0064753144 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
4 Hb_000120_140 0.006746006 - - hypothetical protein POPTR_0009s05160g [Populus trichocarpa]
5 Hb_011671_300 0.0076959876 - - 14.3 kDa oleosin [Jatropha curcas]
6 Hb_003766_030 0.0086821671 - - PREDICTED: nuclear transport factor 2-like [Gossypium raimondii]
7 Hb_004712_100 0.0215032588 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
8 Hb_001198_070 0.0266844393 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000522_100 0.0310909991 - - PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Nelumbo nucifera]
10 Hb_002232_330 0.0312996626 - - -
11 Hb_025248_030 0.0329649839 - - hypothetical protein JCGZ_09377 [Jatropha curcas]
12 Hb_132148_010 0.034210256 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
13 Hb_005171_030 0.0426544491 - - hypothetical protein EUGRSUZ_H02434 [Eucalyptus grandis]
14 Hb_129319_010 0.0428602675 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
15 Hb_005417_020 0.0430487695 - - -
16 Hb_000629_050 0.0437684183 - - -
17 Hb_002582_090 0.0438950961 - - PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum]
18 Hb_011903_030 0.0457274105 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Populus euphratica]
19 Hb_048826_010 0.0465565801 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB28-like [Jatropha curcas]
20 Hb_039385_010 0.0479817019 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008637_010 Hb_008637_010 Hb_001373_120 Hb_001373_120 Hb_008637_010--Hb_001373_120 Hb_000264_200 Hb_000264_200 Hb_008637_010--Hb_000264_200 Hb_000120_140 Hb_000120_140 Hb_008637_010--Hb_000120_140 Hb_011671_300 Hb_011671_300 Hb_008637_010--Hb_011671_300 Hb_003766_030 Hb_003766_030 Hb_008637_010--Hb_003766_030 Hb_004712_100 Hb_004712_100 Hb_008637_010--Hb_004712_100 Hb_001373_120--Hb_003766_030 Hb_001373_120--Hb_000264_200 Hb_001373_120--Hb_000120_140 Hb_001373_120--Hb_011671_300 Hb_001373_120--Hb_004712_100 Hb_000264_200--Hb_000120_140 Hb_000264_200--Hb_011671_300 Hb_000264_200--Hb_004712_100 Hb_000264_200--Hb_003766_030 Hb_000120_140--Hb_011671_300 Hb_000120_140--Hb_004712_100 Hb_000120_140--Hb_003766_030 Hb_011671_300--Hb_004712_100 Hb_011671_300--Hb_003766_030 Hb_132148_010 Hb_132148_010 Hb_003766_030--Hb_132148_010 Hb_001198_070 Hb_001198_070 Hb_004712_100--Hb_001198_070 Hb_000522_100 Hb_000522_100 Hb_004712_100--Hb_000522_100 Hb_002232_330 Hb_002232_330 Hb_004712_100--Hb_002232_330 Hb_025248_030 Hb_025248_030 Hb_004712_100--Hb_025248_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.80019 0.687042 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis