Hb_048826_010

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig48826: 4525-5021
Sequence    

Annotation

kegg
ID brp:103831881
description transcription factor MYB122-like
nr
ID XP_012080553.1
description PREDICTED: transcription factor MYB28-like [Jatropha curcas]
swissprot
ID Q9C9C8
description Transcription factor MYB122 OS=Arabidopsis thaliana GN=MYB122 PE=1 SV=1
trembl
ID A0A067KHI0
description MYB family protein OS=Jatropha curcas GN=JCGZ_11650 PE=4 SV=1
Gene Ontology
ID GO:0005634
description myb domain 16-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048826_010 0.0 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB28-like [Jatropha curcas]
2 Hb_002582_090 0.0026646969 - - PREDICTED: cinnamoyl-CoA reductase 1-like [Sesamum indicum]
3 Hb_000672_070 0.0110893434 - - PREDICTED: uncharacterized protein LOC105631678 [Jatropha curcas]
4 Hb_132148_010 0.012357773 - - hypothetical protein CICLE_v10006890mg, partial [Citrus clementina]
5 Hb_101733_020 0.0203133973 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Jatropha curcas]
6 Hb_081445_010 0.0209199043 - - hypothetical protein JCGZ_04541 [Jatropha curcas]
7 Hb_003766_030 0.0378829993 - - PREDICTED: nuclear transport factor 2-like [Gossypium raimondii]
8 Hb_067197_020 0.0410556854 - - -
9 Hb_001373_120 0.0422778143 - - Uncharacterized protein TCM_031358 [Theobroma cacao]
10 Hb_008637_010 0.0465565801 - - Major latex protein, putative [Ricinus communis]
11 Hb_010896_010 0.0521763227 - - -
12 Hb_000264_200 0.0530231197 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]
13 Hb_000120_140 0.0532934013 - - hypothetical protein POPTR_0009s05160g [Populus trichocarpa]
14 Hb_011671_300 0.054241917 - - 14.3 kDa oleosin [Jatropha curcas]
15 Hb_001268_360 0.0592514746 - - PREDICTED: uncharacterized protein LOC104447679 [Eucalyptus grandis]
16 Hb_004712_100 0.0680232196 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
17 Hb_002127_010 0.0683816655 - - Aluminum activated malate transporter family protein, putative [Theobroma cacao]
18 Hb_001198_070 0.0731924655 - - conserved hypothetical protein [Ricinus communis]
19 Hb_168436_010 0.076896741 - - PREDICTED: probable receptor-like protein kinase At1g67000-like [Citrus sinensis]
20 Hb_000522_100 0.0775879647 - - PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Nelumbo nucifera]

Gene co-expression network

sample Hb_048826_010 Hb_048826_010 Hb_002582_090 Hb_002582_090 Hb_048826_010--Hb_002582_090 Hb_000672_070 Hb_000672_070 Hb_048826_010--Hb_000672_070 Hb_132148_010 Hb_132148_010 Hb_048826_010--Hb_132148_010 Hb_101733_020 Hb_101733_020 Hb_048826_010--Hb_101733_020 Hb_081445_010 Hb_081445_010 Hb_048826_010--Hb_081445_010 Hb_003766_030 Hb_003766_030 Hb_048826_010--Hb_003766_030 Hb_002582_090--Hb_132148_010 Hb_002582_090--Hb_000672_070 Hb_002582_090--Hb_101733_020 Hb_002582_090--Hb_081445_010 Hb_002582_090--Hb_003766_030 Hb_000672_070--Hb_101733_020 Hb_000672_070--Hb_081445_010 Hb_000672_070--Hb_132148_010 Hb_067197_020 Hb_067197_020 Hb_000672_070--Hb_067197_020 Hb_132148_010--Hb_003766_030 Hb_001373_120 Hb_001373_120 Hb_132148_010--Hb_001373_120 Hb_132148_010--Hb_101733_020 Hb_101733_020--Hb_081445_010 Hb_101733_020--Hb_067197_020 Hb_010896_010 Hb_010896_010 Hb_101733_020--Hb_010896_010 Hb_081445_010--Hb_067197_020 Hb_081445_010--Hb_010896_010 Hb_003766_030--Hb_001373_120 Hb_008637_010 Hb_008637_010 Hb_003766_030--Hb_008637_010 Hb_000264_200 Hb_000264_200 Hb_003766_030--Hb_000264_200 Hb_000120_140 Hb_000120_140 Hb_003766_030--Hb_000120_140 Hb_011671_300 Hb_011671_300 Hb_003766_030--Hb_011671_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.658969 0.195315 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis