Hb_002192_060

Information

Type -
Description -
Location Contig2192: 60834-62503
Sequence    

Annotation

kegg
ID mus:103974786
description pre-mRNA-processing-splicing factor 8-like
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002192_060 0.0 - - -
2 Hb_048635_010 0.0021871817 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_081212_010 0.0334536542 - - -
4 Hb_000742_050 0.0381009791 - - hypothetical protein CL1373Contig1_03, partial [Pinus lambertiana]
5 Hb_049719_010 0.0407584793 - - ATP binding protein, putative [Ricinus communis]
6 Hb_039385_010 0.0414408119 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_011903_030 0.0436956728 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Populus euphratica]
8 Hb_002539_060 0.0447996868 - - -
9 Hb_000629_050 0.0456548338 - - -
10 Hb_003687_260 0.045765661 - - PREDICTED: inorganic phosphate transporter 1-4-like [Camelina sativa]
11 Hb_005417_020 0.0463744682 - - -
12 Hb_129319_010 0.0465629597 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
13 Hb_005171_030 0.0467687633 - - hypothetical protein EUGRSUZ_H02434 [Eucalyptus grandis]
14 Hb_025248_030 0.056453672 - - hypothetical protein JCGZ_09377 [Jatropha curcas]
15 Hb_173479_010 0.0580586097 - - -
16 Hb_002232_330 0.0581174397 - - -
17 Hb_000522_100 0.0583258925 - - PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Nelumbo nucifera]
18 Hb_001198_070 0.062727157 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004712_100 0.067900028 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
20 Hb_019429_010 0.0790727663 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002192_060 Hb_002192_060 Hb_048635_010 Hb_048635_010 Hb_002192_060--Hb_048635_010 Hb_081212_010 Hb_081212_010 Hb_002192_060--Hb_081212_010 Hb_000742_050 Hb_000742_050 Hb_002192_060--Hb_000742_050 Hb_049719_010 Hb_049719_010 Hb_002192_060--Hb_049719_010 Hb_039385_010 Hb_039385_010 Hb_002192_060--Hb_039385_010 Hb_011903_030 Hb_011903_030 Hb_002192_060--Hb_011903_030 Hb_048635_010--Hb_081212_010 Hb_048635_010--Hb_000742_050 Hb_048635_010--Hb_039385_010 Hb_048635_010--Hb_011903_030 Hb_048635_010--Hb_049719_010 Hb_081212_010--Hb_049719_010 Hb_002539_060 Hb_002539_060 Hb_081212_010--Hb_002539_060 Hb_003687_260 Hb_003687_260 Hb_081212_010--Hb_003687_260 Hb_173479_010 Hb_173479_010 Hb_081212_010--Hb_173479_010 Hb_000742_050--Hb_039385_010 Hb_000742_050--Hb_011903_030 Hb_000629_050 Hb_000629_050 Hb_000742_050--Hb_000629_050 Hb_005417_020 Hb_005417_020 Hb_000742_050--Hb_005417_020 Hb_129319_010 Hb_129319_010 Hb_000742_050--Hb_129319_010 Hb_005171_030 Hb_005171_030 Hb_000742_050--Hb_005171_030 Hb_049719_010--Hb_002539_060 Hb_049719_010--Hb_003687_260 Hb_049719_010--Hb_173479_010 Hb_019429_010 Hb_019429_010 Hb_049719_010--Hb_019429_010 Hb_039385_010--Hb_011903_030 Hb_039385_010--Hb_000629_050 Hb_039385_010--Hb_005417_020 Hb_039385_010--Hb_129319_010 Hb_039385_010--Hb_005171_030 Hb_011903_030--Hb_000629_050 Hb_011903_030--Hb_005417_020 Hb_011903_030--Hb_129319_010 Hb_011903_030--Hb_005171_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0461044 0.0276227 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis