Hb_002539_060

Information

Type -
Description -
Location Contig2539: 35613-36961
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002539_060 0.0 - - -
2 Hb_003687_260 0.0009667078 - - PREDICTED: inorganic phosphate transporter 1-4-like [Camelina sativa]
3 Hb_049719_010 0.0040439483 - - ATP binding protein, putative [Ricinus communis]
4 Hb_081212_010 0.0113523746 - - -
5 Hb_173479_010 0.0132716141 - - -
6 Hb_019429_010 0.0343173007 - - conserved hypothetical protein [Ricinus communis]
7 Hb_072376_010 0.0393508519 - - -
8 Hb_000963_100 0.039630668 - - Protein SUA5, putative [Ricinus communis]
9 Hb_052135_040 0.0396923003 - - -
10 Hb_095589_010 0.0399602291 - - Ankyrin repeat family protein, putative [Theobroma cacao]
11 Hb_000473_130 0.0400849175 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
12 Hb_000603_060 0.0400947613 - - putative gag protein [Coffea canephora]
13 Hb_004785_110 0.0401357817 - - -
14 Hb_002192_060 0.0447996868 - - -
15 Hb_000266_090 0.0461209274 - - -
16 Hb_048635_010 0.0469851135 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_001740_020 0.0480487072 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
18 Hb_007966_010 0.0513268331 - - carbohydrate binding protein, putative [Ricinus communis]
19 Hb_086063_030 0.0520428779 - - PREDICTED: pre-mRNA-processing-splicing factor 8-like [Camelina sativa]
20 Hb_011549_020 0.0599476553 - - -

Gene co-expression network

sample Hb_002539_060 Hb_002539_060 Hb_003687_260 Hb_003687_260 Hb_002539_060--Hb_003687_260 Hb_049719_010 Hb_049719_010 Hb_002539_060--Hb_049719_010 Hb_081212_010 Hb_081212_010 Hb_002539_060--Hb_081212_010 Hb_173479_010 Hb_173479_010 Hb_002539_060--Hb_173479_010 Hb_019429_010 Hb_019429_010 Hb_002539_060--Hb_019429_010 Hb_072376_010 Hb_072376_010 Hb_002539_060--Hb_072376_010 Hb_003687_260--Hb_049719_010 Hb_003687_260--Hb_173479_010 Hb_003687_260--Hb_081212_010 Hb_003687_260--Hb_019429_010 Hb_003687_260--Hb_072376_010 Hb_049719_010--Hb_081212_010 Hb_049719_010--Hb_173479_010 Hb_049719_010--Hb_019429_010 Hb_002192_060 Hb_002192_060 Hb_049719_010--Hb_002192_060 Hb_081212_010--Hb_173479_010 Hb_081212_010--Hb_002192_060 Hb_048635_010 Hb_048635_010 Hb_081212_010--Hb_048635_010 Hb_173479_010--Hb_019429_010 Hb_173479_010--Hb_072376_010 Hb_019429_010--Hb_072376_010 Hb_000963_100 Hb_000963_100 Hb_019429_010--Hb_000963_100 Hb_052135_040 Hb_052135_040 Hb_019429_010--Hb_052135_040 Hb_095589_010 Hb_095589_010 Hb_019429_010--Hb_095589_010 Hb_000473_130 Hb_000473_130 Hb_019429_010--Hb_000473_130 Hb_000603_060 Hb_000603_060 Hb_019429_010--Hb_000603_060 Hb_072376_010--Hb_000963_100 Hb_072376_010--Hb_052135_040 Hb_072376_010--Hb_095589_010 Hb_072376_010--Hb_000473_130 Hb_072376_010--Hb_000603_060 Hb_004785_110 Hb_004785_110 Hb_072376_010--Hb_004785_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0510438 0.0379354 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis