Hb_000963_100

Information

Type -
Description -
Location Contig963: 72863-73932
Sequence    

Annotation

kegg
ID rcu:RCOM_0154480
description Protein SUA5, putative
nr
ID XP_002530287.1
description Protein SUA5, putative [Ricinus communis]
swissprot
ID Q3U5F4
description YrdC domain-containing protein, mitochondrial OS=Mus musculus GN=Yrdc PE=1 SV=1
trembl
ID B9SWB8
description Protein SUA5, putative OS=Ricinus communis GN=RCOM_0154480 PE=4 SV=1
Gene Ontology
ID GO:0003725
description yrdc domain-containing mitochondrial-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000963_100 0.0 - - Protein SUA5, putative [Ricinus communis]
2 Hb_052135_040 6.16664e-05 - - -
3 Hb_072376_010 0.0002799697 - - -
4 Hb_095589_010 0.0003297447 - - Ankyrin repeat family protein, putative [Theobroma cacao]
5 Hb_000473_130 0.0004545034 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
6 Hb_000603_060 0.0004643528 - - putative gag protein [Coffea canephora]
7 Hb_004785_110 0.0005053963 - - -
8 Hb_019429_010 0.0053159136 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000266_090 0.0064944271 - - -
10 Hb_001740_020 0.0084236682 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
11 Hb_007966_010 0.0117045135 - - carbohydrate binding protein, putative [Ricinus communis]
12 Hb_086063_030 0.0124211916 - - PREDICTED: pre-mRNA-processing-splicing factor 8-like [Camelina sativa]
13 Hb_011549_020 0.0203338936 - - -
14 Hb_156637_010 0.0214533227 - - PREDICTED: aldose reductase-like [Camelina sativa]
15 Hb_173479_010 0.0263639693 - - -
16 Hb_000815_180 0.0291133396 - - -
17 Hb_003687_260 0.0386644875 - - PREDICTED: inorganic phosphate transporter 1-4-like [Camelina sativa]
18 Hb_002539_060 0.039630668 - - -
19 Hb_049719_010 0.0436721201 - - ATP binding protein, putative [Ricinus communis]
20 Hb_081212_010 0.0509748405 - - -

Gene co-expression network

sample Hb_000963_100 Hb_000963_100 Hb_052135_040 Hb_052135_040 Hb_000963_100--Hb_052135_040 Hb_072376_010 Hb_072376_010 Hb_000963_100--Hb_072376_010 Hb_095589_010 Hb_095589_010 Hb_000963_100--Hb_095589_010 Hb_000473_130 Hb_000473_130 Hb_000963_100--Hb_000473_130 Hb_000603_060 Hb_000603_060 Hb_000963_100--Hb_000603_060 Hb_004785_110 Hb_004785_110 Hb_000963_100--Hb_004785_110 Hb_052135_040--Hb_095589_010 Hb_052135_040--Hb_072376_010 Hb_052135_040--Hb_000473_130 Hb_052135_040--Hb_000603_060 Hb_052135_040--Hb_004785_110 Hb_072376_010--Hb_095589_010 Hb_072376_010--Hb_000473_130 Hb_072376_010--Hb_000603_060 Hb_072376_010--Hb_004785_110 Hb_095589_010--Hb_000473_130 Hb_095589_010--Hb_000603_060 Hb_095589_010--Hb_004785_110 Hb_000473_130--Hb_000603_060 Hb_000473_130--Hb_004785_110 Hb_000603_060--Hb_004785_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0576277 0.0516719 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis