Hb_000603_060

Information

Type -
Description -
Location Contig603: 58479-66599
Sequence    

Annotation

kegg
ID pop:POPTR_0007s09865g
description hypothetical protein
nr
ID AJE29370.1
description putative gag protein [Coffea canephora]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A0A0B5CXC3
description Putative gag protein OS=Coffea canephora PE=4 SV=1
Gene Ontology
ID GO:0003824
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000603_060 0.0 - - putative gag protein [Coffea canephora]
2 Hb_000473_130 9.8494e-06 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
3 Hb_004785_110 4.10435e-05 - - -
4 Hb_095589_010 0.0001346081 - - Ankyrin repeat family protein, putative [Theobroma cacao]
5 Hb_052135_040 0.0004026864 - - -
6 Hb_000963_100 0.0004643528 - - Protein SUA5, putative [Ricinus communis]
7 Hb_072376_010 0.0007443225 - - -
8 Hb_019429_010 0.0057802614 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000266_090 0.0060300807 - - -
10 Hb_001740_020 0.0079593263 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
11 Hb_007966_010 0.011240182 - - carbohydrate binding protein, putative [Ricinus communis]
12 Hb_086063_030 0.0119568629 - - PREDICTED: pre-mRNA-processing-splicing factor 8-like [Camelina sativa]
13 Hb_011549_020 0.019869606 - - -
14 Hb_156637_010 0.0209890426 - - PREDICTED: aldose reductase-like [Camelina sativa]
15 Hb_173479_010 0.0268282069 - - -
16 Hb_000815_180 0.0286491213 - - -
17 Hb_003687_260 0.0391285933 - - PREDICTED: inorganic phosphate transporter 1-4-like [Camelina sativa]
18 Hb_002539_060 0.0400947613 - - -
19 Hb_049719_010 0.0441361578 - - ATP binding protein, putative [Ricinus communis]
20 Hb_081212_010 0.0514387637 - - -

Gene co-expression network

sample Hb_000603_060 Hb_000603_060 Hb_000473_130 Hb_000473_130 Hb_000603_060--Hb_000473_130 Hb_004785_110 Hb_004785_110 Hb_000603_060--Hb_004785_110 Hb_095589_010 Hb_095589_010 Hb_000603_060--Hb_095589_010 Hb_052135_040 Hb_052135_040 Hb_000603_060--Hb_052135_040 Hb_000963_100 Hb_000963_100 Hb_000603_060--Hb_000963_100 Hb_072376_010 Hb_072376_010 Hb_000603_060--Hb_072376_010 Hb_000473_130--Hb_004785_110 Hb_000473_130--Hb_095589_010 Hb_000473_130--Hb_052135_040 Hb_000473_130--Hb_000963_100 Hb_000473_130--Hb_072376_010 Hb_004785_110--Hb_095589_010 Hb_004785_110--Hb_052135_040 Hb_004785_110--Hb_000963_100 Hb_004785_110--Hb_072376_010 Hb_095589_010--Hb_052135_040 Hb_095589_010--Hb_000963_100 Hb_095589_010--Hb_072376_010 Hb_052135_040--Hb_000963_100 Hb_052135_040--Hb_072376_010 Hb_000963_100--Hb_072376_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.017056 0.0153268 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis