Hb_000473_130

Information

Type -
Description -
Location Contig473: 224545-226364
Sequence    

Annotation

kegg
ID cmo:103497647
description uncharacterized LOC103497647
nr
ID XP_012458064.1
description PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0MQD4
description Phosphate import ATP-binding PstB 2 OS=Gossypium arboreum GN=F383_30012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000473_130 0.0 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
2 Hb_000603_060 9.8494e-06 - - putative gag protein [Coffea canephora]
3 Hb_004785_110 5.0893e-05 - - -
4 Hb_095589_010 0.0001247587 - - Ankyrin repeat family protein, putative [Theobroma cacao]
5 Hb_052135_040 0.000392837 - - -
6 Hb_000963_100 0.0004545034 - - Protein SUA5, putative [Ricinus communis]
7 Hb_072376_010 0.0007344731 - - -
8 Hb_019429_010 0.0057704121 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000266_090 0.00603993 - - -
10 Hb_001740_020 0.0079691754 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
11 Hb_007966_010 0.011250031 - - carbohydrate binding protein, putative [Ricinus communis]
12 Hb_086063_030 0.0119667118 - - PREDICTED: pre-mRNA-processing-splicing factor 8-like [Camelina sativa]
13 Hb_011549_020 0.0198794541 - - -
14 Hb_156637_010 0.0209988905 - - PREDICTED: aldose reductase-like [Camelina sativa]
15 Hb_173479_010 0.02681836 - - -
16 Hb_000815_180 0.0286589679 - - -
17 Hb_003687_260 0.0391187492 - - PREDICTED: inorganic phosphate transporter 1-4-like [Camelina sativa]
18 Hb_002539_060 0.0400849175 - - -
19 Hb_049719_010 0.0441263151 - - ATP binding protein, putative [Ricinus communis]
20 Hb_081212_010 0.0514289235 - - -

Gene co-expression network

sample Hb_000473_130 Hb_000473_130 Hb_000603_060 Hb_000603_060 Hb_000473_130--Hb_000603_060 Hb_004785_110 Hb_004785_110 Hb_000473_130--Hb_004785_110 Hb_095589_010 Hb_095589_010 Hb_000473_130--Hb_095589_010 Hb_052135_040 Hb_052135_040 Hb_000473_130--Hb_052135_040 Hb_000963_100 Hb_000963_100 Hb_000473_130--Hb_000963_100 Hb_072376_010 Hb_072376_010 Hb_000473_130--Hb_072376_010 Hb_000603_060--Hb_004785_110 Hb_000603_060--Hb_095589_010 Hb_000603_060--Hb_052135_040 Hb_000603_060--Hb_000963_100 Hb_000603_060--Hb_072376_010 Hb_004785_110--Hb_095589_010 Hb_004785_110--Hb_052135_040 Hb_004785_110--Hb_000963_100 Hb_004785_110--Hb_072376_010 Hb_095589_010--Hb_052135_040 Hb_095589_010--Hb_000963_100 Hb_095589_010--Hb_072376_010 Hb_052135_040--Hb_000963_100 Hb_052135_040--Hb_072376_010 Hb_000963_100--Hb_072376_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0178614 0.0160498 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis