Hb_022768_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig22768: 19590-20797
Sequence    

Annotation

kegg
ID pop:POPTR_0019s14140g
description POPTRDRAFT_665990; hypothetical protein
nr
ID XP_011047495.1
description PREDICTED: myb-related protein Myb4-like [Populus euphratica]
swissprot
ID Q7XBH4
description Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2
trembl
ID B9INU3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s14140g PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein myb4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022768_010 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
2 Hb_031862_150 0.0652363568 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
3 Hb_015978_040 0.0708147337 - - PREDICTED: uncharacterized protein LOC105642609 [Jatropha curcas]
4 Hb_034132_010 0.0801720579 - - hypothetical protein B456_007G015400 [Gossypium raimondii]
5 Hb_001565_050 0.0847360146 - - PREDICTED: receptor-like protein kinase 5 [Eucalyptus grandis]
6 Hb_005946_190 0.088546986 - - hypothetical protein EUGRSUZ_C01051 [Eucalyptus grandis]
7 Hb_005725_180 0.0920578765 - - -
8 Hb_000016_220 0.0921643497 transcription factor TF Family: AP2 CRT/DRE binding factor 1 [Hevea brasiliensis]
9 Hb_000086_600 0.0943671126 - - -
10 Hb_106810_010 0.0947792296 - - receptor serine/threonine kinase, putative [Ricinus communis]
11 Hb_012691_040 0.0969594289 - - PREDICTED: cytochrome P450 81E8-like [Fragaria vesca subsp. vesca]
12 Hb_048538_010 0.098732594 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Prunus mume]
13 Hb_001514_110 0.0987850563 - - conserved hypothetical protein [Ricinus communis]
14 Hb_147137_020 0.0998797269 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
15 Hb_005843_070 0.1009645205 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
16 Hb_142691_010 0.1016756136 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
17 Hb_005618_020 0.1037029218 - - hypothetical protein RCOM_1342750 [Ricinus communis]
18 Hb_004157_080 0.1042353574 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
19 Hb_000522_120 0.1051315498 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
20 Hb_117602_010 0.1062703092 - - dimethylaniline monooxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_022768_010 Hb_022768_010 Hb_031862_150 Hb_031862_150 Hb_022768_010--Hb_031862_150 Hb_015978_040 Hb_015978_040 Hb_022768_010--Hb_015978_040 Hb_034132_010 Hb_034132_010 Hb_022768_010--Hb_034132_010 Hb_001565_050 Hb_001565_050 Hb_022768_010--Hb_001565_050 Hb_005946_190 Hb_005946_190 Hb_022768_010--Hb_005946_190 Hb_005725_180 Hb_005725_180 Hb_022768_010--Hb_005725_180 Hb_048538_010 Hb_048538_010 Hb_031862_150--Hb_048538_010 Hb_147137_020 Hb_147137_020 Hb_031862_150--Hb_147137_020 Hb_000227_410 Hb_000227_410 Hb_031862_150--Hb_000227_410 Hb_000086_600 Hb_000086_600 Hb_031862_150--Hb_000086_600 Hb_142691_010 Hb_142691_010 Hb_031862_150--Hb_142691_010 Hb_015978_040--Hb_005725_180 Hb_015978_040--Hb_034132_010 Hb_032966_010 Hb_032966_010 Hb_015978_040--Hb_032966_010 Hb_015978_040--Hb_001565_050 Hb_005843_070 Hb_005843_070 Hb_015978_040--Hb_005843_070 Hb_034132_010--Hb_001565_050 Hb_117602_010 Hb_117602_010 Hb_034132_010--Hb_117602_010 Hb_005843_080 Hb_005843_080 Hb_034132_010--Hb_005843_080 Hb_034132_010--Hb_005725_180 Hb_001565_050--Hb_142691_010 Hb_012691_040 Hb_012691_040 Hb_001565_050--Hb_012691_040 Hb_008579_010 Hb_008579_010 Hb_001565_050--Hb_008579_010 Hb_001514_110 Hb_001514_110 Hb_001565_050--Hb_001514_110 Hb_005946_190--Hb_005843_070 Hb_005946_190--Hb_005725_180 Hb_004157_080 Hb_004157_080 Hb_005946_190--Hb_004157_080 Hb_005946_190--Hb_015978_040 Hb_005946_190--Hb_001514_110 Hb_005725_180--Hb_005843_070 Hb_005725_180--Hb_001514_110 Hb_005725_180--Hb_012691_040 Hb_004117_360 Hb_004117_360 Hb_005725_180--Hb_004117_360 Hb_111908_010 Hb_111908_010 Hb_005725_180--Hb_111908_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0362529 17.327 3.01811 1.03453 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0422387 0.209826

CAGE analysis