Hb_004157_080

Information

Type transcription factor
Description TF Family: C2H2
Location Contig4157: 53983-54483
Sequence    

Annotation

kegg
ID rcu:RCOM_0390960
description nucleic acid binding protein, putative
nr
ID XP_012064980.1
description PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
swissprot
ID Q42410
description Zinc finger protein ZAT12 OS=Arabidopsis thaliana GN=ZAT12 PE=2 SV=1
trembl
ID A0A067L6W4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05663 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein zat11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41117: 53932-54576
cDNA
(Sanger)
(ID:Location)		 002_D18.ab1: 53932-54576 , 028_P17.ab1: 53932-54576 , 049_E03.ab1: 54148-54579

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004157_080 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
2 Hb_005946_190 0.0737565676 - - hypothetical protein EUGRSUZ_C01051 [Eucalyptus grandis]
3 Hb_004117_360 0.083187907 - - hypothetical protein JCGZ_00367 [Jatropha curcas]
4 Hb_111908_010 0.0841438539 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_001514_110 0.0861947252 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005725_180 0.0875983928 - - -
7 Hb_044026_010 0.0904941382 - - PREDICTED: cytochrome P450 93A3-like [Jatropha curcas]
8 Hb_005843_070 0.0930294965 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
9 Hb_001565_050 0.0936456348 - - PREDICTED: receptor-like protein kinase 5 [Eucalyptus grandis]
10 Hb_012691_040 0.0956649214 - - PREDICTED: cytochrome P450 81E8-like [Fragaria vesca subsp. vesca]
11 Hb_147137_020 0.0990886177 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
12 Hb_015978_040 0.1041446315 - - PREDICTED: uncharacterized protein LOC105642609 [Jatropha curcas]
13 Hb_022768_010 0.1042353574 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
14 Hb_073423_010 0.106305061 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_142691_010 0.1087452964 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
16 Hb_002486_030 0.1104225713 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
17 Hb_008579_010 0.1113516806 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
18 Hb_031862_150 0.1116436782 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
19 Hb_001405_260 0.1118137034 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]
20 Hb_000522_120 0.1121186649 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]

Gene co-expression network

sample Hb_004157_080 Hb_004157_080 Hb_005946_190 Hb_005946_190 Hb_004157_080--Hb_005946_190 Hb_004117_360 Hb_004117_360 Hb_004157_080--Hb_004117_360 Hb_111908_010 Hb_111908_010 Hb_004157_080--Hb_111908_010 Hb_001514_110 Hb_001514_110 Hb_004157_080--Hb_001514_110 Hb_005725_180 Hb_005725_180 Hb_004157_080--Hb_005725_180 Hb_044026_010 Hb_044026_010 Hb_004157_080--Hb_044026_010 Hb_005843_070 Hb_005843_070 Hb_005946_190--Hb_005843_070 Hb_005946_190--Hb_005725_180 Hb_015978_040 Hb_015978_040 Hb_005946_190--Hb_015978_040 Hb_005946_190--Hb_001514_110 Hb_022768_010 Hb_022768_010 Hb_005946_190--Hb_022768_010 Hb_004117_360--Hb_001514_110 Hb_012691_040 Hb_012691_040 Hb_004117_360--Hb_012691_040 Hb_073423_010 Hb_073423_010 Hb_004117_360--Hb_073423_010 Hb_002486_030 Hb_002486_030 Hb_004117_360--Hb_002486_030 Hb_008579_010 Hb_008579_010 Hb_004117_360--Hb_008579_010 Hb_142691_010 Hb_142691_010 Hb_004117_360--Hb_142691_010 Hb_111908_010--Hb_004117_360 Hb_111908_010--Hb_001514_110 Hb_111908_010--Hb_005725_180 Hb_110048_010 Hb_110048_010 Hb_111908_010--Hb_110048_010 Hb_111908_010--Hb_012691_040 Hb_111908_010--Hb_005843_070 Hb_001514_110--Hb_012691_040 Hb_001514_110--Hb_005725_180 Hb_001514_110--Hb_073423_010 Hb_001514_110--Hb_142691_010 Hb_001514_110--Hb_002486_030 Hb_005725_180--Hb_005843_070 Hb_005725_180--Hb_012691_040 Hb_005725_180--Hb_004117_360 Hb_005725_180--Hb_015978_040 Hb_001405_260 Hb_001405_260 Hb_044026_010--Hb_001405_260 Hb_044026_010--Hb_110048_010 Hb_000333_150 Hb_000333_150 Hb_044026_010--Hb_000333_150 Hb_005648_030 Hb_005648_030 Hb_044026_010--Hb_005648_030 Hb_044026_010--Hb_111908_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.73739 1588.73 181.954 59.7064 0.457137 0.519872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.14698 6.72605 1.78115 6.7706 2.55526

CAGE analysis