Hb_001749_020

Information

Type -
Description -
Location Contig1749: 33829-35996
Sequence    

Annotation

kegg
ID cic:CICLE_v10004944mg
description hypothetical protein
nr
ID KDO40294.1
description hypothetical protein CISIN_1g042220mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DBD7
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g042220mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001749_020 0.0 - - hypothetical protein CISIN_1g042220mg, partial [Citrus sinensis]
2 Hb_001486_130 0.0779990109 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
3 Hb_001376_020 0.080442592 - - hypothetical protein JCGZ_01547 [Jatropha curcas]
4 Hb_001403_070 0.084197932 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
5 Hb_008707_020 0.0971249011 - - ATP binding protein, putative [Ricinus communis]
6 Hb_004656_030 0.0983965796 - - putative pectin methylesterase family protein [Populus trichocarpa]
7 Hb_000656_360 0.0993001224 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
8 Hb_029866_140 0.1015520231 - - PREDICTED: hevamine-A [Jatropha curcas]
9 Hb_003847_140 0.1063389217 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
10 Hb_022630_010 0.109946704 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
11 Hb_027913_010 0.1139399465 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_000035_360 0.1156011987 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
13 Hb_011924_030 0.1163024308 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000277_020 0.117818785 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
15 Hb_004931_050 0.1246935075 transcription factor TF Family: MYB-related Transcription repressor MYB4, putative [Ricinus communis]
16 Hb_006452_140 0.1250580491 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
17 Hb_005643_010 0.1267162926 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
18 Hb_000796_100 0.1269823344 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
19 Hb_078477_010 0.1274750883 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
20 Hb_004161_010 0.1280214099 - - hypothetical protein JCGZ_21278 [Jatropha curcas]

Gene co-expression network

sample Hb_001749_020 Hb_001749_020 Hb_001486_130 Hb_001486_130 Hb_001749_020--Hb_001486_130 Hb_001376_020 Hb_001376_020 Hb_001749_020--Hb_001376_020 Hb_001403_070 Hb_001403_070 Hb_001749_020--Hb_001403_070 Hb_008707_020 Hb_008707_020 Hb_001749_020--Hb_008707_020 Hb_004656_030 Hb_004656_030 Hb_001749_020--Hb_004656_030 Hb_000656_360 Hb_000656_360 Hb_001749_020--Hb_000656_360 Hb_001486_130--Hb_001376_020 Hb_001486_130--Hb_008707_020 Hb_001486_130--Hb_001403_070 Hb_004931_050 Hb_004931_050 Hb_001486_130--Hb_004931_050 Hb_000035_360 Hb_000035_360 Hb_001486_130--Hb_000035_360 Hb_001376_020--Hb_008707_020 Hb_029866_140 Hb_029866_140 Hb_001376_020--Hb_029866_140 Hb_001376_020--Hb_000035_360 Hb_001376_020--Hb_000656_360 Hb_006124_040 Hb_006124_040 Hb_001403_070--Hb_006124_040 Hb_022630_010 Hb_022630_010 Hb_001403_070--Hb_022630_010 Hb_011924_030 Hb_011924_030 Hb_001403_070--Hb_011924_030 Hb_006452_140 Hb_006452_140 Hb_001403_070--Hb_006452_140 Hb_008707_020--Hb_000035_360 Hb_003847_140 Hb_003847_140 Hb_008707_020--Hb_003847_140 Hb_039650_010 Hb_039650_010 Hb_008707_020--Hb_039650_010 Hb_008707_020--Hb_011924_030 Hb_027913_010 Hb_027913_010 Hb_004656_030--Hb_027913_010 Hb_004656_030--Hb_022630_010 Hb_004656_030--Hb_000656_360 Hb_004656_030--Hb_003847_140 Hb_078477_010 Hb_078477_010 Hb_004656_030--Hb_078477_010 Hb_000656_360--Hb_003847_140 Hb_000656_360--Hb_029866_140 Hb_176149_010 Hb_176149_010 Hb_000656_360--Hb_176149_010 Hb_066262_010 Hb_066262_010 Hb_000656_360--Hb_066262_010 Hb_119441_010 Hb_119441_010 Hb_000656_360--Hb_119441_010 Hb_000369_150 Hb_000369_150 Hb_000656_360--Hb_000369_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.67009 0.213818 0.246375 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.667376 0

CAGE analysis