Hb_001510_050

Information

Type -
Description -
Location Contig1510: 103001-103542
Sequence    

Annotation

kegg
ID rcu:RCOM_0294100
description zinc finger protein, putative
nr
ID XP_002533000.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9SLD4
description Zinc finger protein ZAT11 OS=Arabidopsis thaliana GN=ZAT11 PE=2 SV=1
trembl
ID B9T431
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0294100 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein zat11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001510_050 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_007371_010 0.0612022532 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
3 Hb_004098_010 0.0845325875 - - -
4 Hb_000369_150 0.1029918484 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20185 [Jatropha curcas]
5 Hb_133646_010 0.1083264429 - - hypothetical protein RCOM_1044030 [Ricinus communis]
6 Hb_176149_010 0.1171734044 - - hypothetical protein JCGZ_16793 [Jatropha curcas]
7 Hb_000128_010 0.1208712613 - - dimethylaniline monooxygenase, putative [Ricinus communis]
8 Hb_010368_040 0.1225719892 - - conserved hypothetical protein [Ricinus communis]
9 Hb_119441_010 0.1265386291 - - hypothetical protein CISIN_1g0477971mg, partial [Citrus sinensis]
10 Hb_001998_130 0.1305696609 transcription factor TF Family: WRKY WRKY transcription factor 35 family protein [Populus trichocarpa]
11 Hb_001693_030 0.1350238232 - - PREDICTED: reticuline oxidase-like [Jatropha curcas]
12 Hb_013862_010 0.1440720583 - - PREDICTED: uncharacterized protein LOC105650642 [Jatropha curcas]
13 Hb_000656_360 0.1469496342 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
14 Hb_000336_160 0.1485219157 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000879_100 0.149279083 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
16 Hb_005694_030 0.1493544475 - - PREDICTED: E3 ubiquitin-protein ligase PUB22-like [Jatropha curcas]
17 Hb_027913_010 0.1527752487 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_005163_010 0.1534455943 - - PREDICTED: probable terpene synthase 11 [Jatropha curcas]
19 Hb_000627_140 0.1548647822 - - ATP binding protein, putative [Ricinus communis]
20 Hb_001190_020 0.1583869475 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001510_050 Hb_001510_050 Hb_007371_010 Hb_007371_010 Hb_001510_050--Hb_007371_010 Hb_004098_010 Hb_004098_010 Hb_001510_050--Hb_004098_010 Hb_000369_150 Hb_000369_150 Hb_001510_050--Hb_000369_150 Hb_133646_010 Hb_133646_010 Hb_001510_050--Hb_133646_010 Hb_176149_010 Hb_176149_010 Hb_001510_050--Hb_176149_010 Hb_000128_010 Hb_000128_010 Hb_001510_050--Hb_000128_010 Hb_010368_040 Hb_010368_040 Hb_007371_010--Hb_010368_040 Hb_007371_010--Hb_133646_010 Hb_000336_160 Hb_000336_160 Hb_007371_010--Hb_000336_160 Hb_001693_030 Hb_001693_030 Hb_007371_010--Hb_001693_030 Hb_007371_010--Hb_004098_010 Hb_004098_010--Hb_000128_010 Hb_004098_010--Hb_000369_150 Hb_004098_010--Hb_176149_010 Hb_119441_010 Hb_119441_010 Hb_004098_010--Hb_119441_010 Hb_006351_080 Hb_006351_080 Hb_004098_010--Hb_006351_080 Hb_000369_150--Hb_119441_010 Hb_000879_100 Hb_000879_100 Hb_000369_150--Hb_000879_100 Hb_000369_150--Hb_000128_010 Hb_000369_150--Hb_176149_010 Hb_005643_010 Hb_005643_010 Hb_000369_150--Hb_005643_010 Hb_133646_010--Hb_176149_010 Hb_000656_360 Hb_000656_360 Hb_133646_010--Hb_000656_360 Hb_133646_010--Hb_004098_010 Hb_027913_010 Hb_027913_010 Hb_133646_010--Hb_027913_010 Hb_000347_370 Hb_000347_370 Hb_133646_010--Hb_000347_370 Hb_176149_010--Hb_000128_010 Hb_004586_380 Hb_004586_380 Hb_176149_010--Hb_004586_380 Hb_176149_010--Hb_006351_080 Hb_176149_010--Hb_000656_360 Hb_000128_010--Hb_006351_080 Hb_000128_010--Hb_004586_380 Hb_000128_010--Hb_119441_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.65441 0 0.12286 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0403357 0

CAGE analysis