Hb_005643_010

Information

Type transcription factor
Description TF Family: ERF
Location Contig5643: 9046-9861
Sequence    

Annotation

kegg
ID rcu:RCOM_1438510
description DNA binding protein, putative
nr
ID XP_002512683.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9FZ90
description Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1
trembl
ID B9RG14
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1438510 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005643_010 0.0 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
2 Hb_001331_050 0.0222711262 - - hypothetical protein VITISV_022439 [Vitis vinifera]
3 Hb_119441_010 0.0505183645 - - hypothetical protein CISIN_1g0477971mg, partial [Citrus sinensis]
4 Hb_000879_100 0.0573296518 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
5 Hb_000369_150 0.0735069686 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20185 [Jatropha curcas]
6 Hb_066262_010 0.0939561778 - - hypothetical protein JCGZ_14798 [Jatropha curcas]
7 Hb_000277_020 0.0943299368 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
8 Hb_011924_030 0.0958096681 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_064855_010 0.0983085236 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_003847_140 0.0996017689 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
11 Hb_000035_360 0.1024104774 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
12 Hb_000656_360 0.1031727737 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
13 Hb_045810_010 0.1039947242 - - PREDICTED: laccase-12-like [Jatropha curcas]
14 Hb_000233_060 0.1045070798 - - hypothetical protein JCGZ_14793 [Jatropha curcas]
15 Hb_006351_080 0.1057424579 - - hypothetical protein B456_011G275400 [Gossypium raimondii]
16 Hb_066262_020 0.1079637174 - - hypothetical protein JCGZ_14803 [Jatropha curcas]
17 Hb_000796_100 0.1095658945 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
18 Hb_004098_010 0.1110674955 - - -
19 Hb_023827_010 0.1125203193 - - Cucumber peeling cupredoxin, putative [Ricinus communis]
20 Hb_000128_010 0.1149764318 - - dimethylaniline monooxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005643_010 Hb_005643_010 Hb_001331_050 Hb_001331_050 Hb_005643_010--Hb_001331_050 Hb_119441_010 Hb_119441_010 Hb_005643_010--Hb_119441_010 Hb_000879_100 Hb_000879_100 Hb_005643_010--Hb_000879_100 Hb_000369_150 Hb_000369_150 Hb_005643_010--Hb_000369_150 Hb_066262_010 Hb_066262_010 Hb_005643_010--Hb_066262_010 Hb_000277_020 Hb_000277_020 Hb_005643_010--Hb_000277_020 Hb_001331_050--Hb_119441_010 Hb_001331_050--Hb_000369_150 Hb_001331_050--Hb_000879_100 Hb_045810_010 Hb_045810_010 Hb_001331_050--Hb_045810_010 Hb_006351_080 Hb_006351_080 Hb_001331_050--Hb_006351_080 Hb_119441_010--Hb_000369_150 Hb_119441_010--Hb_000879_100 Hb_004098_010 Hb_004098_010 Hb_119441_010--Hb_004098_010 Hb_000128_010 Hb_000128_010 Hb_119441_010--Hb_000128_010 Hb_000879_100--Hb_000369_150 Hb_000879_100--Hb_066262_010 Hb_003847_140 Hb_003847_140 Hb_000879_100--Hb_003847_140 Hb_000369_150--Hb_004098_010 Hb_000369_150--Hb_000128_010 Hb_176149_010 Hb_176149_010 Hb_000369_150--Hb_176149_010 Hb_066262_010--Hb_003847_140 Hb_000656_360 Hb_000656_360 Hb_066262_010--Hb_000656_360 Hb_000233_060 Hb_000233_060 Hb_066262_010--Hb_000233_060 Hb_066262_010--Hb_119441_010 Hb_000277_020--Hb_001331_050 Hb_000277_020--Hb_003847_140 Hb_000035_360 Hb_000035_360 Hb_000277_020--Hb_000035_360 Hb_011924_030 Hb_011924_030 Hb_000277_020--Hb_011924_030 Hb_002701_140 Hb_002701_140 Hb_000277_020--Hb_002701_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.523077 0 0.0263162 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0627288 0

CAGE analysis