Hb_000277_020

Information

Type -
Description -
Location Contig277: 25375-34005
Sequence    

Annotation

kegg
ID rcu:RCOM_0909020
description ankyrin repeat-containing protein, putative
nr
ID KDP36387.1
description hypothetical protein JCGZ_08656 [Jatropha curcas]
swissprot
ID O49399
description Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
trembl
ID B9RTE9
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0909020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000277_020 0.0 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
2 Hb_005643_010 0.0943299368 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
3 Hb_001331_050 0.0955602465 - - hypothetical protein VITISV_022439 [Vitis vinifera]
4 Hb_003847_140 0.1003173161 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
5 Hb_000035_360 0.1063906249 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
6 Hb_011924_030 0.1075583773 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_002701_140 0.1077465943 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
8 Hb_000796_100 0.1134280614 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
9 Hb_119441_010 0.1158319318 - - hypothetical protein CISIN_1g0477971mg, partial [Citrus sinensis]
10 Hb_000879_100 0.1176781369 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
11 Hb_001749_020 0.117818785 - - hypothetical protein CISIN_1g042220mg, partial [Citrus sinensis]
12 Hb_006351_080 0.1180221169 - - hypothetical protein B456_011G275400 [Gossypium raimondii]
13 Hb_000656_360 0.1182914851 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
14 Hb_000844_020 0.1210077439 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
15 Hb_064855_010 0.1213563127 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_000233_060 0.1262899861 - - hypothetical protein JCGZ_14793 [Jatropha curcas]
17 Hb_066262_010 0.1266787186 - - hypothetical protein JCGZ_14798 [Jatropha curcas]
18 Hb_008707_020 0.12705187 - - ATP binding protein, putative [Ricinus communis]
19 Hb_002067_110 0.1271992982 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
20 Hb_066262_020 0.1285957318 - - hypothetical protein JCGZ_14803 [Jatropha curcas]

Gene co-expression network

sample Hb_000277_020 Hb_000277_020 Hb_005643_010 Hb_005643_010 Hb_000277_020--Hb_005643_010 Hb_001331_050 Hb_001331_050 Hb_000277_020--Hb_001331_050 Hb_003847_140 Hb_003847_140 Hb_000277_020--Hb_003847_140 Hb_000035_360 Hb_000035_360 Hb_000277_020--Hb_000035_360 Hb_011924_030 Hb_011924_030 Hb_000277_020--Hb_011924_030 Hb_002701_140 Hb_002701_140 Hb_000277_020--Hb_002701_140 Hb_005643_010--Hb_001331_050 Hb_119441_010 Hb_119441_010 Hb_005643_010--Hb_119441_010 Hb_000879_100 Hb_000879_100 Hb_005643_010--Hb_000879_100 Hb_000369_150 Hb_000369_150 Hb_005643_010--Hb_000369_150 Hb_066262_010 Hb_066262_010 Hb_005643_010--Hb_066262_010 Hb_001331_050--Hb_119441_010 Hb_001331_050--Hb_000369_150 Hb_001331_050--Hb_000879_100 Hb_045810_010 Hb_045810_010 Hb_001331_050--Hb_045810_010 Hb_006351_080 Hb_006351_080 Hb_001331_050--Hb_006351_080 Hb_000656_360 Hb_000656_360 Hb_003847_140--Hb_000656_360 Hb_003847_140--Hb_066262_010 Hb_008707_020 Hb_008707_020 Hb_003847_140--Hb_008707_020 Hb_005081_060 Hb_005081_060 Hb_003847_140--Hb_005081_060 Hb_003847_140--Hb_011924_030 Hb_029866_140 Hb_029866_140 Hb_003847_140--Hb_029866_140 Hb_000035_360--Hb_008707_020 Hb_000233_060 Hb_000233_060 Hb_000035_360--Hb_000233_060 Hb_000035_360--Hb_011924_030 Hb_001376_020 Hb_001376_020 Hb_000035_360--Hb_001376_020 Hb_000284_060 Hb_000284_060 Hb_000035_360--Hb_000284_060 Hb_000035_360--Hb_001331_050 Hb_000871_020 Hb_000871_020 Hb_011924_030--Hb_000871_020 Hb_011924_030--Hb_000284_060 Hb_000796_100 Hb_000796_100 Hb_011924_030--Hb_000796_100 Hb_009740_010 Hb_009740_010 Hb_011924_030--Hb_009740_010 Hb_004161_010 Hb_004161_010 Hb_002701_140--Hb_004161_010 Hb_000940_020 Hb_000940_020 Hb_002701_140--Hb_000940_020 Hb_000825_040 Hb_000825_040 Hb_002701_140--Hb_000825_040 Hb_002701_140--Hb_003847_140 Hb_002701_140--Hb_000656_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.15885 0.00689421 0.0471538 0 0.0162632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.151951 0

CAGE analysis