Hb_000825_040

Information

Type -
Description -
Location Contig825: 62747-64561
Sequence    

Annotation

kegg
ID rcu:RCOM_1482380
description catalytic, putative
nr
ID XP_002524233.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q9FGF0
description Phosphoglycerate mutase-like protein 1 OS=Arabidopsis thaliana GN=At5g64460 PE=2 SV=1
trembl
ID B9SE14
description Catalytic, putative OS=Ricinus communis GN=RCOM_1482380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000825_040 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_002701_140 0.1360744056 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
3 Hb_000277_020 0.1547586934 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
4 Hb_006351_080 0.179133056 - - hypothetical protein B456_011G275400 [Gossypium raimondii]
5 Hb_119441_010 0.1829791959 - - hypothetical protein CISIN_1g0477971mg, partial [Citrus sinensis]
6 Hb_000369_150 0.183725714 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20185 [Jatropha curcas]
7 Hb_000940_020 0.1868328667 - - hypothetical protein POPTR_0004s17500g [Populus trichocarpa]
8 Hb_004098_010 0.1879135897 - - -
9 Hb_176149_010 0.1902737618 - - hypothetical protein JCGZ_16793 [Jatropha curcas]
10 Hb_000128_010 0.1903781713 - - dimethylaniline monooxygenase, putative [Ricinus communis]
11 Hb_004586_380 0.191177397 - - purine transporter, putative [Ricinus communis]
12 Hb_001331_050 0.191297319 - - hypothetical protein VITISV_022439 [Vitis vinifera]
13 Hb_005643_010 0.1925517673 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
14 Hb_005424_070 0.1946982003 - - PREDICTED: TATA-box-binding protein 1-like [Jatropha curcas]
15 Hb_004161_010 0.1973983174 - - hypothetical protein JCGZ_21278 [Jatropha curcas]
16 Hb_000879_100 0.1982311538 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
17 Hb_003847_140 0.1983364337 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
18 Hb_000656_360 0.1999973679 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
19 Hb_066262_010 0.2080558791 - - hypothetical protein JCGZ_14798 [Jatropha curcas]
20 Hb_124302_030 0.2093685877 - - PREDICTED: serine carboxypeptidase-like [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_000825_040 Hb_000825_040 Hb_002701_140 Hb_002701_140 Hb_000825_040--Hb_002701_140 Hb_000277_020 Hb_000277_020 Hb_000825_040--Hb_000277_020 Hb_006351_080 Hb_006351_080 Hb_000825_040--Hb_006351_080 Hb_119441_010 Hb_119441_010 Hb_000825_040--Hb_119441_010 Hb_000369_150 Hb_000369_150 Hb_000825_040--Hb_000369_150 Hb_000940_020 Hb_000940_020 Hb_000825_040--Hb_000940_020 Hb_004161_010 Hb_004161_010 Hb_002701_140--Hb_004161_010 Hb_002701_140--Hb_000277_020 Hb_002701_140--Hb_000940_020 Hb_003847_140 Hb_003847_140 Hb_002701_140--Hb_003847_140 Hb_000656_360 Hb_000656_360 Hb_002701_140--Hb_000656_360 Hb_005643_010 Hb_005643_010 Hb_000277_020--Hb_005643_010 Hb_001331_050 Hb_001331_050 Hb_000277_020--Hb_001331_050 Hb_000277_020--Hb_003847_140 Hb_000035_360 Hb_000035_360 Hb_000277_020--Hb_000035_360 Hb_011924_030 Hb_011924_030 Hb_000277_020--Hb_011924_030 Hb_004586_380 Hb_004586_380 Hb_006351_080--Hb_004586_380 Hb_176149_010 Hb_176149_010 Hb_006351_080--Hb_176149_010 Hb_000128_010 Hb_000128_010 Hb_006351_080--Hb_000128_010 Hb_006351_080--Hb_001331_050 Hb_006351_080--Hb_119441_010 Hb_045810_010 Hb_045810_010 Hb_006351_080--Hb_045810_010 Hb_119441_010--Hb_000369_150 Hb_119441_010--Hb_005643_010 Hb_119441_010--Hb_001331_050 Hb_000879_100 Hb_000879_100 Hb_119441_010--Hb_000879_100 Hb_004098_010 Hb_004098_010 Hb_119441_010--Hb_004098_010 Hb_119441_010--Hb_000128_010 Hb_000369_150--Hb_004098_010 Hb_000369_150--Hb_000879_100 Hb_000369_150--Hb_000128_010 Hb_000369_150--Hb_176149_010 Hb_000369_150--Hb_005643_010 Hb_000345_190 Hb_000345_190 Hb_000940_020--Hb_000345_190 Hb_001810_010 Hb_001810_010 Hb_000940_020--Hb_001810_010 Hb_000940_020--Hb_004586_380 Hb_029866_140 Hb_029866_140 Hb_000940_020--Hb_029866_140 Hb_000940_020--Hb_006351_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.951177 0 0.0914175 0 0.0801285
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.11737 0

CAGE analysis