Hb_174829_040

Information

Type -
Description -
Location Contig174829: 24818-25815
Sequence    

Annotation

kegg
ID rcu:RCOM_0340110
description calcium ion binding protein, putative
nr
ID XP_012084717.1
description PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
swissprot
ID Q93Z27
description Probable calcium-binding protein CML45 OS=Arabidopsis thaliana GN=CML45 PE=1 SV=1
trembl
ID A0A067JTD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19861 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml45

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 005_E20.ab1: 24675-25408

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_174829_040 0.0 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
2 Hb_000142_010 0.08297079 - - PREDICTED: uncharacterized protein LOC105632779 [Jatropha curcas]
3 Hb_002042_190 0.0925368157 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
4 Hb_116349_050 0.1030381804 - - formin homology 2 domain-containing family protein [Populus trichocarpa]
5 Hb_002311_490 0.1041833489 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
6 Hb_000172_300 0.1098303376 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
7 Hb_000414_100 0.1113589484 - - PREDICTED: uncharacterized protein LOC105643784 [Jatropha curcas]
8 Hb_000336_160 0.1119142273 - - ATP binding protein, putative [Ricinus communis]
9 Hb_000210_150 0.1143041541 - - PREDICTED: protein YLS9-like [Jatropha curcas]
10 Hb_001437_200 0.1289167163 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
11 Hb_011671_290 0.1372305357 transcription factor TF Family: ERF hypothetical protein JCGZ_26299 [Jatropha curcas]
12 Hb_000627_140 0.1390066164 - - ATP binding protein, putative [Ricinus communis]
13 Hb_048653_040 0.1391460577 - - ankyrin repeat family protein [Populus trichocarpa]
14 Hb_035391_010 0.1399138913 - - TMV resistance protein N, putative [Ricinus communis]
15 Hb_000610_030 0.1410829831 - - hypothetical protein MIMGU_mgv1a0038491mg, partial [Erythranthe guttata]
16 Hb_158123_010 0.1415860695 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
17 Hb_011805_060 0.1464120296 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
18 Hb_002760_060 0.146747653 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
19 Hb_004267_070 0.1482710227 - - latex allene oxide synthase [Hevea brasiliensis]
20 Hb_033153_010 0.1494937837 - - PREDICTED: MLO-like protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_174829_040 Hb_174829_040 Hb_000142_010 Hb_000142_010 Hb_174829_040--Hb_000142_010 Hb_002042_190 Hb_002042_190 Hb_174829_040--Hb_002042_190 Hb_116349_050 Hb_116349_050 Hb_174829_040--Hb_116349_050 Hb_002311_490 Hb_002311_490 Hb_174829_040--Hb_002311_490 Hb_000172_300 Hb_000172_300 Hb_174829_040--Hb_000172_300 Hb_000414_100 Hb_000414_100 Hb_174829_040--Hb_000414_100 Hb_000142_010--Hb_002042_190 Hb_000142_010--Hb_116349_050 Hb_000142_010--Hb_002311_490 Hb_011416_020 Hb_011416_020 Hb_000142_010--Hb_011416_020 Hb_003053_060 Hb_003053_060 Hb_000142_010--Hb_003053_060 Hb_002042_190--Hb_000172_300 Hb_002042_190--Hb_116349_050 Hb_052113_020 Hb_052113_020 Hb_002042_190--Hb_052113_020 Hb_000210_150 Hb_000210_150 Hb_002042_190--Hb_000210_150 Hb_116349_050--Hb_000172_300 Hb_116349_050--Hb_000414_100 Hb_048653_040 Hb_048653_040 Hb_116349_050--Hb_048653_040 Hb_000039_100 Hb_000039_100 Hb_116349_050--Hb_000039_100 Hb_000506_140 Hb_000506_140 Hb_002311_490--Hb_000506_140 Hb_000563_460 Hb_000563_460 Hb_002311_490--Hb_000563_460 Hb_158123_010 Hb_158123_010 Hb_002311_490--Hb_158123_010 Hb_000465_330 Hb_000465_330 Hb_002311_490--Hb_000465_330 Hb_035391_010 Hb_035391_010 Hb_002311_490--Hb_035391_010 Hb_000172_300--Hb_000039_100 Hb_000172_300--Hb_048653_040 Hb_011054_030 Hb_011054_030 Hb_000172_300--Hb_011054_030 Hb_012702_010 Hb_012702_010 Hb_000172_300--Hb_012702_010 Hb_033153_010 Hb_033153_010 Hb_000414_100--Hb_033153_010 Hb_011671_290 Hb_011671_290 Hb_000414_100--Hb_011671_290 Hb_001437_200 Hb_001437_200 Hb_000414_100--Hb_001437_200 Hb_002572_060 Hb_002572_060 Hb_000414_100--Hb_002572_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.17106 589.267 22.9233 78.4071 3.81836 4.22113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.37058 6.57451 3.25767 22.4888 2.97714

CAGE analysis