Hb_000506_140

Information

Type -
Description -
Location Contig506: 162628-163380
Sequence    

Annotation

kegg
ID csv:101229085
description protein DGCR14 homolog
nr
ID XP_007217814.1
description hypothetical protein PRUPE_ppb019425mg [Prunus persica]
swissprot
ID O44424
description Protein DGCR14 homolog OS=Drosophila melanogaster GN=Es2 PE=1 SV=2
trembl
ID M5XBX7
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb019425mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000506_140 0.0 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
2 Hb_000796_200 0.0859032601 - - PREDICTED: probable glycerol-3-phosphate acyltransferase 3 [Jatropha curcas]
3 Hb_002311_490 0.0865974084 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
4 Hb_016404_010 0.109729407 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
5 Hb_000465_330 0.1115365644 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
6 Hb_000506_130 0.1149664996 - - DGCR14-related family protein [Populus trichocarpa]
7 Hb_116349_090 0.1213128788 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
8 Hb_158123_010 0.1243979787 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
9 Hb_183539_010 0.130202821 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
10 Hb_136027_010 0.1302757454 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
11 Hb_017434_020 0.130520328 transcription factor TF Family: C2H2 Zinc finger protein 4 [Populus trichocarpa]
12 Hb_000563_460 0.1331835984 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
13 Hb_000087_180 0.137932352 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000245_270 0.1384143684 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
15 Hb_009247_020 0.1384506446 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
16 Hb_012423_020 0.1385967842 - - hypothetical protein JCGZ_20730 [Jatropha curcas]
17 Hb_000434_050 0.1423897367 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
18 Hb_029238_020 0.1460323472 - - PREDICTED: expansin-like A1 [Jatropha curcas]
19 Hb_185080_010 0.1471373912 - - -
20 Hb_011287_020 0.1476631183 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000506_140 Hb_000506_140 Hb_000796_200 Hb_000796_200 Hb_000506_140--Hb_000796_200 Hb_002311_490 Hb_002311_490 Hb_000506_140--Hb_002311_490 Hb_016404_010 Hb_016404_010 Hb_000506_140--Hb_016404_010 Hb_000465_330 Hb_000465_330 Hb_000506_140--Hb_000465_330 Hb_000506_130 Hb_000506_130 Hb_000506_140--Hb_000506_130 Hb_116349_090 Hb_116349_090 Hb_000506_140--Hb_116349_090 Hb_012423_020 Hb_012423_020 Hb_000796_200--Hb_012423_020 Hb_000796_200--Hb_016404_010 Hb_011287_020 Hb_011287_020 Hb_000796_200--Hb_011287_020 Hb_000796_200--Hb_116349_090 Hb_136027_010 Hb_136027_010 Hb_000796_200--Hb_136027_010 Hb_000563_460 Hb_000563_460 Hb_002311_490--Hb_000563_460 Hb_158123_010 Hb_158123_010 Hb_002311_490--Hb_158123_010 Hb_174829_040 Hb_174829_040 Hb_002311_490--Hb_174829_040 Hb_002311_490--Hb_000465_330 Hb_035391_010 Hb_035391_010 Hb_002311_490--Hb_035391_010 Hb_016404_010--Hb_136027_010 Hb_005568_060 Hb_005568_060 Hb_016404_010--Hb_005568_060 Hb_016404_010--Hb_002311_490 Hb_016404_010--Hb_000465_330 Hb_000465_330--Hb_158123_010 Hb_000465_330--Hb_000796_200 Hb_121913_010 Hb_121913_010 Hb_000465_330--Hb_121913_010 Hb_000245_270 Hb_000245_270 Hb_000506_130--Hb_000245_270 Hb_052113_020 Hb_052113_020 Hb_000506_130--Hb_052113_020 Hb_017434_020 Hb_017434_020 Hb_000506_130--Hb_017434_020 Hb_029238_020 Hb_029238_020 Hb_000506_130--Hb_029238_020 Hb_004143_050 Hb_004143_050 Hb_000506_130--Hb_004143_050 Hb_000805_150 Hb_000805_150 Hb_116349_090--Hb_000805_150 Hb_001511_270 Hb_001511_270 Hb_116349_090--Hb_001511_270 Hb_116349_090--Hb_000245_270 Hb_116349_090--Hb_029238_020 Hb_004242_160 Hb_004242_160 Hb_116349_090--Hb_004242_160 Hb_001477_080 Hb_001477_080 Hb_116349_090--Hb_001477_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2732 636.823 59.5177 151.846 9.70901 15.4587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.90386 4.6612 4.5535 11.7186 18.8248

CAGE analysis