Hb_000245_270

Information

Type transcription factor
Description TF Family: GRAS
Location Contig245: 234111-235742
Sequence    

Annotation

kegg
ID rcu:RCOM_0031770
description Chitin-inducible gibberellin-responsive protein, putative
nr
ID XP_002534218.1
description Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
swissprot
ID Q9M0M5
description Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=2
trembl
ID B9T7J9
description Chitin-inducible gibberellin-responsive protein, putative OS=Ricinus communis GN=RCOM_0031770 PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like protein 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25549: 233886-237889
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000245_270 0.0 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
2 Hb_000506_130 0.0952104476 - - DGCR14-related family protein [Populus trichocarpa]
3 Hb_000805_150 0.0964753883 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
4 Hb_029238_020 0.0981743135 - - PREDICTED: expansin-like A1 [Jatropha curcas]
5 Hb_116349_090 0.1019094951 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
6 Hb_004143_050 0.1106610988 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
7 Hb_078901_010 0.1131403329 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
8 Hb_000181_080 0.1197993155 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
9 Hb_052113_020 0.1222684382 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
10 Hb_125884_010 0.1287494457 - - PREDICTED: metalloendoproteinase 1-like [Jatropha curcas]
11 Hb_001511_270 0.1341442455 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
12 Hb_000506_140 0.1384143684 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
13 Hb_000035_420 0.1391470833 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
14 Hb_000988_020 0.1406343524 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
15 Hb_000434_050 0.1427630098 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
16 Hb_000172_080 0.143450723 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
17 Hb_000359_080 0.1454376666 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
18 Hb_001504_270 0.1509619555 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
19 Hb_017434_020 0.1521432717 transcription factor TF Family: C2H2 Zinc finger protein 4 [Populus trichocarpa]
20 Hb_007441_150 0.1538605481 - - Ankyrin repeat family protein [Theobroma cacao]

Gene co-expression network

sample Hb_000245_270 Hb_000245_270 Hb_000506_130 Hb_000506_130 Hb_000245_270--Hb_000506_130 Hb_000805_150 Hb_000805_150 Hb_000245_270--Hb_000805_150 Hb_029238_020 Hb_029238_020 Hb_000245_270--Hb_029238_020 Hb_116349_090 Hb_116349_090 Hb_000245_270--Hb_116349_090 Hb_004143_050 Hb_004143_050 Hb_000245_270--Hb_004143_050 Hb_078901_010 Hb_078901_010 Hb_000245_270--Hb_078901_010 Hb_000506_140 Hb_000506_140 Hb_000506_130--Hb_000506_140 Hb_052113_020 Hb_052113_020 Hb_000506_130--Hb_052113_020 Hb_017434_020 Hb_017434_020 Hb_000506_130--Hb_017434_020 Hb_000506_130--Hb_029238_020 Hb_000506_130--Hb_004143_050 Hb_000805_150--Hb_078901_010 Hb_000805_150--Hb_116349_090 Hb_011287_020 Hb_011287_020 Hb_000805_150--Hb_011287_020 Hb_009476_010 Hb_009476_010 Hb_000805_150--Hb_009476_010 Hb_007441_150 Hb_007441_150 Hb_000805_150--Hb_007441_150 Hb_029238_020--Hb_116349_090 Hb_029238_020--Hb_000805_150 Hb_001511_270 Hb_001511_270 Hb_029238_020--Hb_001511_270 Hb_002234_200 Hb_002234_200 Hb_029238_020--Hb_002234_200 Hb_116349_090--Hb_001511_270 Hb_004242_160 Hb_004242_160 Hb_116349_090--Hb_004242_160 Hb_001477_080 Hb_001477_080 Hb_116349_090--Hb_001477_080 Hb_000742_260 Hb_000742_260 Hb_004143_050--Hb_000742_260 Hb_019026_030 Hb_019026_030 Hb_004143_050--Hb_019026_030 Hb_003800_010 Hb_003800_010 Hb_004143_050--Hb_003800_010 Hb_004143_050--Hb_029238_020 Hb_000434_050 Hb_000434_050 Hb_078901_010--Hb_000434_050 Hb_078901_010--Hb_009476_010 Hb_000172_080 Hb_000172_080 Hb_078901_010--Hb_000172_080 Hb_000373_250 Hb_000373_250 Hb_078901_010--Hb_000373_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.42197 351.506 42.382 111.801 2.31971 4.24858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.43686 9.23616 8.32471 14.5439 32.4996

CAGE analysis