Hb_017434_020

Information

Type transcription factor
Description TF Family: C2H2
Location Contig17434: 15123-15899
Sequence    

Annotation

kegg
ID pop:POPTR_0004s08240g
description POPTRDRAFT_555999; Zinc finger protein 4
nr
ID XP_002305892.1
description Zinc finger protein 4 [Populus trichocarpa]
swissprot
ID Q39263
description Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2
trembl
ID B9H3D1
description Zinc finger protein 4 OS=Populus trichocarpa GN=POPTR_0004s08240g PE=4 SV=1
Gene Ontology
ID GO:0003700
description zinc finger protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017434_020 0.0 transcription factor TF Family: C2H2 Zinc finger protein 4 [Populus trichocarpa]
2 Hb_000087_180 0.0772101537 - - conserved hypothetical protein [Ricinus communis]
3 Hb_183539_010 0.1180294299 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
4 Hb_000506_130 0.1189110994 - - DGCR14-related family protein [Populus trichocarpa]
5 Hb_000506_140 0.130520328 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
6 Hb_005183_010 0.133901894 - - PREDICTED: probable calcium-binding protein CML17 [Malus domestica]
7 Hb_004607_180 0.1344271563 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004968_050 0.1348474656 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
9 Hb_019516_050 0.1397887785 - - hypothetical protein JCGZ_04619 [Jatropha curcas]
10 Hb_052113_020 0.1423061423 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
11 Hb_087468_010 0.1465601566 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
12 Hb_029238_020 0.1479153108 - - PREDICTED: expansin-like A1 [Jatropha curcas]
13 Hb_000245_270 0.1521432717 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
14 Hb_000252_190 0.1529607587 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
15 Hb_000417_230 0.1557740329 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003800_010 0.1558343769 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
17 Hb_005714_140 0.1564374814 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
18 Hb_012760_060 0.1571262918 - - PREDICTED: uncharacterized protein LOC105647085 isoform X1 [Jatropha curcas]
19 Hb_004143_050 0.1577755156 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
20 Hb_024857_010 0.159981301 - - glutaredoxin 2.1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_017434_020 Hb_017434_020 Hb_000087_180 Hb_000087_180 Hb_017434_020--Hb_000087_180 Hb_183539_010 Hb_183539_010 Hb_017434_020--Hb_183539_010 Hb_000506_130 Hb_000506_130 Hb_017434_020--Hb_000506_130 Hb_000506_140 Hb_000506_140 Hb_017434_020--Hb_000506_140 Hb_005183_010 Hb_005183_010 Hb_017434_020--Hb_005183_010 Hb_004607_180 Hb_004607_180 Hb_017434_020--Hb_004607_180 Hb_000087_180--Hb_005183_010 Hb_004968_050 Hb_004968_050 Hb_000087_180--Hb_004968_050 Hb_000087_180--Hb_000506_130 Hb_005714_140 Hb_005714_140 Hb_000087_180--Hb_005714_140 Hb_000417_230 Hb_000417_230 Hb_000087_180--Hb_000417_230 Hb_183539_010--Hb_000506_140 Hb_183539_010--Hb_000087_180 Hb_006911_060 Hb_006911_060 Hb_183539_010--Hb_006911_060 Hb_183539_010--Hb_000506_130 Hb_001529_020 Hb_001529_020 Hb_183539_010--Hb_001529_020 Hb_000245_270 Hb_000245_270 Hb_000506_130--Hb_000245_270 Hb_000506_130--Hb_000506_140 Hb_052113_020 Hb_052113_020 Hb_000506_130--Hb_052113_020 Hb_029238_020 Hb_029238_020 Hb_000506_130--Hb_029238_020 Hb_004143_050 Hb_004143_050 Hb_000506_130--Hb_004143_050 Hb_000796_200 Hb_000796_200 Hb_000506_140--Hb_000796_200 Hb_002311_490 Hb_002311_490 Hb_000506_140--Hb_002311_490 Hb_016404_010 Hb_016404_010 Hb_000506_140--Hb_016404_010 Hb_000465_330 Hb_000465_330 Hb_000506_140--Hb_000465_330 Hb_116349_090 Hb_116349_090 Hb_000506_140--Hb_116349_090 Hb_012395_260 Hb_012395_260 Hb_005183_010--Hb_012395_260 Hb_005183_010--Hb_004968_050 Hb_000668_170 Hb_000668_170 Hb_005183_010--Hb_000668_170 Hb_005183_010--Hb_000417_230 Hb_077562_010 Hb_077562_010 Hb_004607_180--Hb_077562_010 Hb_000318_320 Hb_000318_320 Hb_004607_180--Hb_000318_320 Hb_002639_090 Hb_002639_090 Hb_004607_180--Hb_002639_090 Hb_087468_010 Hb_087468_010 Hb_004607_180--Hb_087468_010 Hb_004607_180--Hb_001529_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.107109 4.11926 0.298562 1.63539 0.0285855 0.101922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0551667 0 0.156468 0.220821

CAGE analysis