Hb_006911_060

Information

Type -
Description -
Location Contig6911: 60020-63898
Sequence    

Annotation

kegg
ID cit:102608012
description uncharacterized LOC102608012
nr
ID KDO39611.1
description hypothetical protein CISIN_1g000594mg [Citrus sinensis]
swissprot
ID O23530
description Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3
trembl
ID A0A067DLZ1
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g000594mg PE=4 SV=1
Gene Ontology
ID GO:0005515
description lrr and nb-arc domains-containing disease resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54356: 59639-60006 , PASA_asmbl_54357: 2197-61487
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006911_060 0.0 - - hypothetical protein CISIN_1g000594mg [Citrus sinensis]
2 Hb_001504_270 0.1156934816 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
3 Hb_000397_090 0.1234297536 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
4 Hb_006052_040 0.1375473565 - - pyruvate decarboxylase [Hevea brasiliensis]
5 Hb_012702_010 0.1442484922 - - PREDICTED: TMV resistance protein N-like isoform X4 [Vitis vinifera]
6 Hb_009247_020 0.1446607351 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
7 Hb_183539_010 0.1471060492 - - hypothetical protein POPTR_0005s04441g [Populus trichocarpa]
8 Hb_004122_020 0.1483205846 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
9 Hb_000181_080 0.1511095016 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
10 Hb_006198_060 0.1515414278 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
11 Hb_000363_110 0.1530797566 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
12 Hb_011925_010 0.1545059219 - - PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
13 Hb_004531_010 0.1581569184 - - PREDICTED: ankyrin repeat-containing protein At2g01680-like [Jatropha curcas]
14 Hb_007305_040 0.1585437143 - - Nodulin-26, putative [Ricinus communis]
15 Hb_133508_010 0.1609586097 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
16 Hb_000625_040 0.161200853 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
17 Hb_000506_140 0.1616054092 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
18 Hb_019961_010 0.1635333857 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
19 Hb_007137_030 0.1655157667 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
20 Hb_116635_010 0.1660590203 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]

Gene co-expression network

sample Hb_006911_060 Hb_006911_060 Hb_001504_270 Hb_001504_270 Hb_006911_060--Hb_001504_270 Hb_000397_090 Hb_000397_090 Hb_006911_060--Hb_000397_090 Hb_006052_040 Hb_006052_040 Hb_006911_060--Hb_006052_040 Hb_012702_010 Hb_012702_010 Hb_006911_060--Hb_012702_010 Hb_009247_020 Hb_009247_020 Hb_006911_060--Hb_009247_020 Hb_183539_010 Hb_183539_010 Hb_006911_060--Hb_183539_010 Hb_000181_080 Hb_000181_080 Hb_001504_270--Hb_000181_080 Hb_000172_080 Hb_000172_080 Hb_001504_270--Hb_000172_080 Hb_001345_030 Hb_001345_030 Hb_001504_270--Hb_001345_030 Hb_001504_270--Hb_000397_090 Hb_078901_010 Hb_078901_010 Hb_001504_270--Hb_078901_010 Hb_000363_110 Hb_000363_110 Hb_000397_090--Hb_000363_110 Hb_000397_090--Hb_001345_030 Hb_000003_420 Hb_000003_420 Hb_000397_090--Hb_000003_420 Hb_006698_020 Hb_006698_020 Hb_000397_090--Hb_006698_020 Hb_000359_080 Hb_000359_080 Hb_000397_090--Hb_000359_080 Hb_006198_060 Hb_006198_060 Hb_006052_040--Hb_006198_060 Hb_004122_020 Hb_004122_020 Hb_006052_040--Hb_004122_020 Hb_002475_010 Hb_002475_010 Hb_006052_040--Hb_002475_010 Hb_003376_150 Hb_003376_150 Hb_006052_040--Hb_003376_150 Hb_004712_140 Hb_004712_140 Hb_006052_040--Hb_004712_140 Hb_041290_030 Hb_041290_030 Hb_006052_040--Hb_041290_030 Hb_019961_010 Hb_019961_010 Hb_012702_010--Hb_019961_010 Hb_002272_140 Hb_002272_140 Hb_012702_010--Hb_002272_140 Hb_138628_010 Hb_138628_010 Hb_012702_010--Hb_138628_010 Hb_000172_300 Hb_000172_300 Hb_012702_010--Hb_000172_300 Hb_004531_010 Hb_004531_010 Hb_012702_010--Hb_004531_010 Hb_011054_030 Hb_011054_030 Hb_012702_010--Hb_011054_030 Hb_136027_010 Hb_136027_010 Hb_009247_020--Hb_136027_010 Hb_005568_060 Hb_005568_060 Hb_009247_020--Hb_005568_060 Hb_009189_010 Hb_009189_010 Hb_009247_020--Hb_009189_010 Hb_001411_150 Hb_001411_150 Hb_009247_020--Hb_001411_150 Hb_000563_460 Hb_000563_460 Hb_009247_020--Hb_000563_460 Hb_016404_010 Hb_016404_010 Hb_009247_020--Hb_016404_010 Hb_017434_020 Hb_017434_020 Hb_183539_010--Hb_017434_020 Hb_000506_140 Hb_000506_140 Hb_183539_010--Hb_000506_140 Hb_000087_180 Hb_000087_180 Hb_183539_010--Hb_000087_180 Hb_000506_130 Hb_000506_130 Hb_183539_010--Hb_000506_130 Hb_001529_020 Hb_001529_020 Hb_183539_010--Hb_001529_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.668937 23.6646 2.07686 4.8822 0.583001 0.398259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0195627 0 0 2.29391 1.69764

CAGE analysis