Hb_001504_270

Information

Type -
Description -
Location Contig1504: 284706-307881
Sequence    

Annotation

kegg
ID rcu:RCOM_0471640
description ATP-binding cassette transporter, putative (EC:3.6.3.41)
nr
ID XP_012073071.1
description PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
swissprot
ID Q7PC84
description ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=3 SV=1
trembl
ID A0A067KXJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06051 PE=4 SV=1
Gene Ontology
ID GO:0016020
description atp-binding cassette

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12663: 299867-300659 , PASA_asmbl_12664: 302570-303223 , PASA_asmbl_12665: 303927-304485
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_270 0.0 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
2 Hb_006911_060 0.1156934816 - - hypothetical protein CISIN_1g000594mg [Citrus sinensis]
3 Hb_000181_080 0.1379082149 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
4 Hb_000172_080 0.1385179132 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
5 Hb_001345_030 0.1393697689 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
6 Hb_000397_090 0.140904505 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
7 Hb_078901_010 0.1421638247 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
8 Hb_000103_400 0.1423934801 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
9 Hb_000015_180 0.1479713015 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
10 Hb_102100_010 0.1488466046 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
11 Hb_009247_020 0.1491540724 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
12 Hb_000506_140 0.1501130143 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
13 Hb_000245_270 0.1509619555 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
14 Hb_000434_050 0.1563767119 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
15 Hb_138575_010 0.1565683249 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
16 Hb_001248_110 0.1570284405 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
17 Hb_008253_040 0.1571627258 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
18 Hb_000363_110 0.158444867 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
19 Hb_000307_110 0.1590149349 - - hypothetical protein JCGZ_08160 [Jatropha curcas]
20 Hb_004030_070 0.1612865355 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]

Gene co-expression network

sample Hb_001504_270 Hb_001504_270 Hb_006911_060 Hb_006911_060 Hb_001504_270--Hb_006911_060 Hb_000181_080 Hb_000181_080 Hb_001504_270--Hb_000181_080 Hb_000172_080 Hb_000172_080 Hb_001504_270--Hb_000172_080 Hb_001345_030 Hb_001345_030 Hb_001504_270--Hb_001345_030 Hb_000397_090 Hb_000397_090 Hb_001504_270--Hb_000397_090 Hb_078901_010 Hb_078901_010 Hb_001504_270--Hb_078901_010 Hb_006911_060--Hb_000397_090 Hb_006052_040 Hb_006052_040 Hb_006911_060--Hb_006052_040 Hb_012702_010 Hb_012702_010 Hb_006911_060--Hb_012702_010 Hb_009247_020 Hb_009247_020 Hb_006911_060--Hb_009247_020 Hb_183539_010 Hb_183539_010 Hb_006911_060--Hb_183539_010 Hb_000307_110 Hb_000307_110 Hb_000181_080--Hb_000307_110 Hb_004531_010 Hb_004531_010 Hb_000181_080--Hb_004531_010 Hb_000103_400 Hb_000103_400 Hb_000181_080--Hb_000103_400 Hb_000245_270 Hb_000245_270 Hb_000181_080--Hb_000245_270 Hb_000210_150 Hb_000210_150 Hb_000181_080--Hb_000210_150 Hb_007429_020 Hb_007429_020 Hb_000181_080--Hb_007429_020 Hb_000359_080 Hb_000359_080 Hb_000172_080--Hb_000359_080 Hb_004166_010 Hb_004166_010 Hb_000172_080--Hb_004166_010 Hb_000172_080--Hb_078901_010 Hb_008253_040 Hb_008253_040 Hb_000172_080--Hb_008253_040 Hb_000172_080--Hb_001345_030 Hb_098160_010 Hb_098160_010 Hb_000172_080--Hb_098160_010 Hb_001345_030--Hb_000397_090 Hb_000363_110 Hb_000363_110 Hb_001345_030--Hb_000363_110 Hb_077995_010 Hb_077995_010 Hb_001345_030--Hb_077995_010 Hb_001345_030--Hb_004166_010 Hb_001345_030--Hb_000359_080 Hb_000397_090--Hb_000363_110 Hb_000003_420 Hb_000003_420 Hb_000397_090--Hb_000003_420 Hb_006698_020 Hb_006698_020 Hb_000397_090--Hb_006698_020 Hb_000397_090--Hb_000359_080 Hb_000805_150 Hb_000805_150 Hb_078901_010--Hb_000805_150 Hb_000434_050 Hb_000434_050 Hb_078901_010--Hb_000434_050 Hb_009476_010 Hb_009476_010 Hb_078901_010--Hb_009476_010 Hb_078901_010--Hb_000245_270 Hb_000373_250 Hb_000373_250 Hb_078901_010--Hb_000373_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.106538 3.80985 0.336448 0.697366 0.12855 0.12516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0378637 0.0670507 0.0288087 0.295869 0.369891

CAGE analysis