Hb_000307_110

Information

Type -
Description -
Location Contig307: 111952-118040
Sequence    

Annotation

kegg
ID rcu:RCOM_1599570
description phospholipase d delta, putative (EC:3.1.4.4)
nr
ID KDP36869.1
description hypothetical protein JCGZ_08160 [Jatropha curcas]
swissprot
ID Q9C5Y0
description Phospholipase D delta OS=Arabidopsis thaliana GN=PLDDELTA PE=1 SV=2
trembl
ID A0A067KYD8
description Phospholipase D OS=Jatropha curcas GN=JCGZ_08160 PE=3 SV=1
Gene Ontology
ID GO:0016020
description phospholipase d delta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32416: 110999-112581 , PASA_asmbl_32418: 113721-114280 , PASA_asmbl_32419: 114583-115194 , PASA_asmbl_32420: 115850-117298
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000307_110 0.0 - - hypothetical protein JCGZ_08160 [Jatropha curcas]
2 Hb_000181_080 0.113220786 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
3 Hb_002284_020 0.1349797571 - - PREDICTED: probable inorganic phosphate transporter 1-9 [Jatropha curcas]
4 Hb_000297_100 0.1394567294 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
5 Hb_003086_050 0.142615173 - - calcium-dependent protein kinase, putative [Ricinus communis]
6 Hb_041290_030 0.143853636 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
7 Hb_000103_400 0.1455625754 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
8 Hb_000359_080 0.146369546 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
9 Hb_141990_050 0.1513836032 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
10 Hb_001504_270 0.1590149349 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
11 Hb_000039_100 0.1619730337 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
12 Hb_004712_140 0.1636151279 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
13 Hb_000172_300 0.1645242967 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
14 Hb_000316_150 0.1663635732 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
15 Hb_078901_010 0.1675021682 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
16 Hb_000245_270 0.1686909883 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
17 Hb_000117_110 0.1700073381 - - transferase, putative [Ricinus communis]
18 Hb_005545_080 0.1701172282 - - hypothetical protein JCGZ_01293 [Jatropha curcas]
19 Hb_000434_050 0.1714850601 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
20 Hb_010962_030 0.1718123506 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000307_110 Hb_000307_110 Hb_000181_080 Hb_000181_080 Hb_000307_110--Hb_000181_080 Hb_002284_020 Hb_002284_020 Hb_000307_110--Hb_002284_020 Hb_000297_100 Hb_000297_100 Hb_000307_110--Hb_000297_100 Hb_003086_050 Hb_003086_050 Hb_000307_110--Hb_003086_050 Hb_041290_030 Hb_041290_030 Hb_000307_110--Hb_041290_030 Hb_000103_400 Hb_000103_400 Hb_000307_110--Hb_000103_400 Hb_004531_010 Hb_004531_010 Hb_000181_080--Hb_004531_010 Hb_000181_080--Hb_000103_400 Hb_000245_270 Hb_000245_270 Hb_000181_080--Hb_000245_270 Hb_000210_150 Hb_000210_150 Hb_000181_080--Hb_000210_150 Hb_007429_020 Hb_007429_020 Hb_000181_080--Hb_007429_020 Hb_002272_140 Hb_002272_140 Hb_002284_020--Hb_002272_140 Hb_000473_080 Hb_000473_080 Hb_002284_020--Hb_000473_080 Hb_000322_120 Hb_000322_120 Hb_002284_020--Hb_000322_120 Hb_174380_010 Hb_174380_010 Hb_002284_020--Hb_174380_010 Hb_000003_420 Hb_000003_420 Hb_002284_020--Hb_000003_420 Hb_021596_070 Hb_021596_070 Hb_002284_020--Hb_021596_070 Hb_000297_100--Hb_002284_020 Hb_005545_080 Hb_005545_080 Hb_000297_100--Hb_005545_080 Hb_001568_060 Hb_001568_060 Hb_000297_100--Hb_001568_060 Hb_141990_050 Hb_141990_050 Hb_000297_100--Hb_141990_050 Hb_004712_140 Hb_004712_140 Hb_000297_100--Hb_004712_140 Hb_013057_030 Hb_013057_030 Hb_003086_050--Hb_013057_030 Hb_015978_030 Hb_015978_030 Hb_003086_050--Hb_015978_030 Hb_116349_050 Hb_116349_050 Hb_003086_050--Hb_116349_050 Hb_048653_020 Hb_048653_020 Hb_003086_050--Hb_048653_020 Hb_003086_050--Hb_000103_400 Hb_041290_030--Hb_004712_140 Hb_000123_310 Hb_000123_310 Hb_041290_030--Hb_000123_310 Hb_010962_030 Hb_010962_030 Hb_041290_030--Hb_010962_030 Hb_006198_060 Hb_006198_060 Hb_041290_030--Hb_006198_060 Hb_006052_040 Hb_006052_040 Hb_041290_030--Hb_006052_040 Hb_000146_110 Hb_000146_110 Hb_041290_030--Hb_000146_110 Hb_000103_400--Hb_002272_140 Hb_000103_400--Hb_000473_080 Hb_006414_020 Hb_006414_020 Hb_000103_400--Hb_006414_020 Hb_000359_080 Hb_000359_080 Hb_000103_400--Hb_000359_080 Hb_000803_060 Hb_000803_060 Hb_000103_400--Hb_000803_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.248947 17.068 1.74843 1.79811 0.00728877 0.0535957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.313892 0.559003 0.297766 1.18167 1.71559

CAGE analysis