Hb_003086_050

Information

Type -
Description -
Location Contig3086: 43036-46802
Sequence    

Annotation

kegg
ID rcu:RCOM_0422070
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_002524091.1
description calcium-dependent protein kinase, putative [Ricinus communis]
swissprot
ID Q38870
description Calcium-dependent protein kinase 2 OS=Arabidopsis thaliana GN=CPK2 PE=1 SV=1
trembl
ID B9SDM2
description Calcium-dependent protein kinase, putative OS=Ricinus communis GN=RCOM_0422070 PE=4 SV=1
Gene Ontology
ID GO:0004683
description calcium-dependent protein kinase 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003086_050 0.0 - - calcium-dependent protein kinase, putative [Ricinus communis]
2 Hb_000307_110 0.142615173 - - hypothetical protein JCGZ_08160 [Jatropha curcas]
3 Hb_013057_030 0.1529024432 - - conserved hypothetical protein [Ricinus communis]
4 Hb_015978_030 0.1559029701 - - Zinc finger protein GIS2 [Medicago truncatula]
5 Hb_116349_050 0.1748615021 - - formin homology 2 domain-containing family protein [Populus trichocarpa]
6 Hb_048653_020 0.18002406 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_000103_400 0.1816357462 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
8 Hb_001504_270 0.185371626 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
9 Hb_003442_050 0.1907732063 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
10 Hb_000172_300 0.1924111719 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
11 Hb_000181_080 0.1926932966 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
12 Hb_001863_450 0.1936268943 - - cryptochrome 1.2 [Populus tremula]
13 Hb_000039_100 0.1959414521 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
14 Hb_000809_080 0.1977870778 - - 50S ribosomal protein L25, putative [Ricinus communis]
15 Hb_000574_120 0.1996318417 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003053_060 0.2001954618 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
17 Hb_002995_030 0.2018442848 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004324_290 0.2024312046 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
19 Hb_008616_060 0.2025830426 - - syntaxin, putative [Ricinus communis]
20 Hb_010962_030 0.2031295146 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003086_050 Hb_003086_050 Hb_000307_110 Hb_000307_110 Hb_003086_050--Hb_000307_110 Hb_013057_030 Hb_013057_030 Hb_003086_050--Hb_013057_030 Hb_015978_030 Hb_015978_030 Hb_003086_050--Hb_015978_030 Hb_116349_050 Hb_116349_050 Hb_003086_050--Hb_116349_050 Hb_048653_020 Hb_048653_020 Hb_003086_050--Hb_048653_020 Hb_000103_400 Hb_000103_400 Hb_003086_050--Hb_000103_400 Hb_000181_080 Hb_000181_080 Hb_000307_110--Hb_000181_080 Hb_002284_020 Hb_002284_020 Hb_000307_110--Hb_002284_020 Hb_000297_100 Hb_000297_100 Hb_000307_110--Hb_000297_100 Hb_041290_030 Hb_041290_030 Hb_000307_110--Hb_041290_030 Hb_000307_110--Hb_000103_400 Hb_002217_440 Hb_002217_440 Hb_013057_030--Hb_002217_440 Hb_048653_040 Hb_048653_040 Hb_013057_030--Hb_048653_040 Hb_013057_030--Hb_048653_020 Hb_000172_300 Hb_000172_300 Hb_013057_030--Hb_000172_300 Hb_013057_030--Hb_116349_050 Hb_003053_060 Hb_003053_060 Hb_015978_030--Hb_003053_060 Hb_000072_330 Hb_000072_330 Hb_015978_030--Hb_000072_330 Hb_004324_290 Hb_004324_290 Hb_015978_030--Hb_004324_290 Hb_015978_030--Hb_013057_030 Hb_003095_050 Hb_003095_050 Hb_015978_030--Hb_003095_050 Hb_116349_050--Hb_000172_300 Hb_174829_040 Hb_174829_040 Hb_116349_050--Hb_174829_040 Hb_000414_100 Hb_000414_100 Hb_116349_050--Hb_000414_100 Hb_002042_190 Hb_002042_190 Hb_116349_050--Hb_002042_190 Hb_116349_050--Hb_048653_040 Hb_000039_100 Hb_000039_100 Hb_116349_050--Hb_000039_100 Hb_002918_150 Hb_002918_150 Hb_048653_020--Hb_002918_150 Hb_138575_010 Hb_138575_010 Hb_048653_020--Hb_138575_010 Hb_048653_020--Hb_002217_440 Hb_002272_140 Hb_002272_140 Hb_048653_020--Hb_002272_140 Hb_000103_400--Hb_002272_140 Hb_000103_400--Hb_000181_080 Hb_000473_080 Hb_000473_080 Hb_000103_400--Hb_000473_080 Hb_006414_020 Hb_006414_020 Hb_000103_400--Hb_006414_020 Hb_000359_080 Hb_000359_080 Hb_000103_400--Hb_000359_080 Hb_000803_060 Hb_000803_060 Hb_000103_400--Hb_000803_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0879127 4.54802 0.213292 0.286783 0.0312832 0.108822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.213041 0.167624 0.141107 0.444775 0.353792

CAGE analysis