Hb_003095_050

Information

Type -
Description -
Location Contig3095: 30867-31754
Sequence    

Annotation

kegg
ID pop:POPTR_0009s11210g
description POPTRDRAFT_1087010; hypothetical protein
nr
ID XP_012069230.1
description PREDICTED: transmembrane protein 45B [Jatropha curcas]
swissprot
ID Q3T130
description Transmembrane protein 45B OS=Bos taurus GN=TMEM45B PE=2 SV=1
trembl
ID A0A067LMY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10025 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 45b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003095_050 0.0 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
2 Hb_003053_060 0.1669155095 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
3 Hb_015978_030 0.1776687858 - - Zinc finger protein GIS2 [Medicago truncatula]
4 Hb_000142_010 0.1810934912 - - PREDICTED: uncharacterized protein LOC105632779 [Jatropha curcas]
5 Hb_059580_010 0.1984808965 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
6 Hb_000275_070 0.2055302015 - - PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas]
7 Hb_075449_030 0.2115890249 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
8 Hb_000072_330 0.2141243389 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000574_120 0.2159815139 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004324_290 0.2194892312 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
11 Hb_047833_010 0.2233741297 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
12 Hb_001277_150 0.2235544923 - - hypothetical protein VITISV_043492 [Vitis vinifera]
13 Hb_011416_020 0.2242623135 - - conserved hypothetical protein [Ricinus communis]
14 Hb_174829_040 0.2249796562 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
15 Hb_001277_140 0.2259512215 - - PREDICTED: plasma membrane calcium-transporting ATPase 2-like [Takifugu rubripes]
16 Hb_013057_030 0.2275567479 - - conserved hypothetical protein [Ricinus communis]
17 Hb_054886_010 0.228005177 - - conserved hypothetical protein [Ricinus communis]
18 Hb_116349_050 0.2366332389 - - formin homology 2 domain-containing family protein [Populus trichocarpa]
19 Hb_002835_260 0.2401812975 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
20 Hb_011120_020 0.2403774049 - - PREDICTED: casein kinase I-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003095_050 Hb_003095_050 Hb_003053_060 Hb_003053_060 Hb_003095_050--Hb_003053_060 Hb_015978_030 Hb_015978_030 Hb_003095_050--Hb_015978_030 Hb_000142_010 Hb_000142_010 Hb_003095_050--Hb_000142_010 Hb_059580_010 Hb_059580_010 Hb_003095_050--Hb_059580_010 Hb_000275_070 Hb_000275_070 Hb_003095_050--Hb_000275_070 Hb_075449_030 Hb_075449_030 Hb_003095_050--Hb_075449_030 Hb_003053_060--Hb_015978_030 Hb_003053_060--Hb_000142_010 Hb_174829_040 Hb_174829_040 Hb_003053_060--Hb_174829_040 Hb_004324_290 Hb_004324_290 Hb_003053_060--Hb_004324_290 Hb_002835_260 Hb_002835_260 Hb_003053_060--Hb_002835_260 Hb_136886_010 Hb_136886_010 Hb_003053_060--Hb_136886_010 Hb_003086_050 Hb_003086_050 Hb_015978_030--Hb_003086_050 Hb_000072_330 Hb_000072_330 Hb_015978_030--Hb_000072_330 Hb_015978_030--Hb_004324_290 Hb_013057_030 Hb_013057_030 Hb_015978_030--Hb_013057_030 Hb_000142_010--Hb_174829_040 Hb_002042_190 Hb_002042_190 Hb_000142_010--Hb_002042_190 Hb_116349_050 Hb_116349_050 Hb_000142_010--Hb_116349_050 Hb_002311_490 Hb_002311_490 Hb_000142_010--Hb_002311_490 Hb_011416_020 Hb_011416_020 Hb_000142_010--Hb_011416_020 Hb_001277_150 Hb_001277_150 Hb_059580_010--Hb_001277_150 Hb_005940_040 Hb_005940_040 Hb_059580_010--Hb_005940_040 Hb_000215_120 Hb_000215_120 Hb_059580_010--Hb_000215_120 Hb_002760_060 Hb_002760_060 Hb_059580_010--Hb_002760_060 Hb_001985_010 Hb_001985_010 Hb_059580_010--Hb_001985_010 Hb_018609_010 Hb_018609_010 Hb_059580_010--Hb_018609_010 Hb_005725_190 Hb_005725_190 Hb_000275_070--Hb_005725_190 Hb_000275_070--Hb_000142_010 Hb_000574_120 Hb_000574_120 Hb_000275_070--Hb_000574_120 Hb_000275_070--Hb_013057_030 Hb_007218_140 Hb_007218_140 Hb_000275_070--Hb_007218_140 Hb_000172_300 Hb_000172_300 Hb_000275_070--Hb_000172_300 Hb_075449_030--Hb_116349_050 Hb_075449_030--Hb_002042_190 Hb_075449_030--Hb_000142_010 Hb_075449_030--Hb_174829_040 Hb_052113_020 Hb_052113_020 Hb_075449_030--Hb_052113_020 Hb_075449_030--Hb_003053_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.500447 16.7214 0.0407828 1.7795 0.0755563 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.647799 1.06517 0.760664 0.168148 0.0938654

CAGE analysis