Hb_059580_010

Information

Type -
Description -
Location Contig59580: 4-795
Sequence    

Annotation

kegg
ID rcu:RCOM_0910800
description cation-transporting atpase plant, putative (EC:3.6.3.8)
nr
ID XP_012069933.1
description PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
swissprot
ID Q9LIK7
description Putative calcium-transporting ATPase 13, plasma membrane-type OS=Arabidopsis thaliana GN=ACA13 PE=3 SV=1
trembl
ID A0A067KVP2
description Calcium-transporting ATPase OS=Jatropha curcas GN=JCGZ_02244 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_059580_010 0.0 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
2 Hb_001277_150 0.1092800079 - - hypothetical protein VITISV_043492 [Vitis vinifera]
3 Hb_005940_040 0.1442205968 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
4 Hb_000215_120 0.1688263014 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
5 Hb_002760_060 0.1730976024 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
6 Hb_001985_010 0.1777139271 - - conserved hypothetical protein [Ricinus communis]
7 Hb_018609_010 0.1796413365 - - conserved hypothetical protein [Ricinus communis]
8 Hb_033153_010 0.1826880299 - - PREDICTED: MLO-like protein 12 [Jatropha curcas]
9 Hb_054886_010 0.1871096829 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004059_010 0.1911814645 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
11 Hb_000336_170 0.1926653072 - - Polcalcin Jun o, putative [Ricinus communis]
12 Hb_186671_020 0.1940160952 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_027556_080 0.1942150357 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [Jatropha curcas]
14 Hb_005163_010 0.194894252 - - PREDICTED: probable terpene synthase 11 [Jatropha curcas]
15 Hb_005529_050 0.1961819398 - - PREDICTED: cytochrome P450 94B3-like [Nelumbo nucifera]
16 Hb_000016_290 0.1962224568 - - multidrug resistance pump, putative [Ricinus communis]
17 Hb_003095_050 0.1984808965 - - PREDICTED: transmembrane protein 45B [Jatropha curcas]
18 Hb_001796_010 0.1988751578 - - purine transporter, putative [Ricinus communis]
19 Hb_001190_020 0.1997945672 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_000261_540 0.2008878289 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_059580_010 Hb_059580_010 Hb_001277_150 Hb_001277_150 Hb_059580_010--Hb_001277_150 Hb_005940_040 Hb_005940_040 Hb_059580_010--Hb_005940_040 Hb_000215_120 Hb_000215_120 Hb_059580_010--Hb_000215_120 Hb_002760_060 Hb_002760_060 Hb_059580_010--Hb_002760_060 Hb_001985_010 Hb_001985_010 Hb_059580_010--Hb_001985_010 Hb_018609_010 Hb_018609_010 Hb_059580_010--Hb_018609_010 Hb_033153_010 Hb_033153_010 Hb_001277_150--Hb_033153_010 Hb_001277_150--Hb_000215_120 Hb_001277_150--Hb_001985_010 Hb_005648_030 Hb_005648_030 Hb_001277_150--Hb_005648_030 Hb_001277_150--Hb_002760_060 Hb_005940_040--Hb_000215_120 Hb_000016_290 Hb_000016_290 Hb_005940_040--Hb_000016_290 Hb_005940_040--Hb_018609_010 Hb_004059_010 Hb_004059_010 Hb_005940_040--Hb_004059_010 Hb_001796_010 Hb_001796_010 Hb_005940_040--Hb_001796_010 Hb_000215_120--Hb_004059_010 Hb_000215_120--Hb_000016_290 Hb_000215_120--Hb_001796_010 Hb_186671_020 Hb_186671_020 Hb_000215_120--Hb_186671_020 Hb_005687_020 Hb_005687_020 Hb_000215_120--Hb_005687_020 Hb_000215_120--Hb_018609_010 Hb_002760_060--Hb_033153_010 Hb_000414_100 Hb_000414_100 Hb_002760_060--Hb_000414_100 Hb_174829_040 Hb_174829_040 Hb_002760_060--Hb_174829_040 Hb_001514_040 Hb_001514_040 Hb_002760_060--Hb_001514_040 Hb_011671_290 Hb_011671_290 Hb_002760_060--Hb_011671_290 Hb_027556_080 Hb_027556_080 Hb_001985_010--Hb_027556_080 Hb_054886_010 Hb_054886_010 Hb_001985_010--Hb_054886_010 Hb_000336_170 Hb_000336_170 Hb_001985_010--Hb_000336_170 Hb_163950_060 Hb_163950_060 Hb_001985_010--Hb_163950_060 Hb_011980_020 Hb_011980_020 Hb_001985_010--Hb_011980_020 Hb_007943_040 Hb_007943_040 Hb_001985_010--Hb_007943_040 Hb_018609_010--Hb_001796_010 Hb_018609_010--Hb_186671_020 Hb_005050_010 Hb_005050_010 Hb_018609_010--Hb_005050_010 Hb_099085_010 Hb_099085_010 Hb_018609_010--Hb_099085_010 Hb_000979_270 Hb_000979_270 Hb_018609_010--Hb_000979_270 Hb_064583_010 Hb_064583_010 Hb_018609_010--Hb_064583_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.201206 24.9169 0.164707 0.583811 0.0836282 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.136788 0.268886 1.06905 0.391943 0.107842

CAGE analysis