Hb_000016_290

Information

Type -
Description -
Location Contig16: 302211-303869
Sequence    

Annotation

kegg
ID rcu:RCOM_1497400
description multidrug resistance pump, putative
nr
ID XP_002510841.1
description multidrug resistance pump, putative [Ricinus communis]
swissprot
ID Q3V050
description Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1
trembl
ID B9R9G6
description MATE efflux family protein OS=Ricinus communis GN=RCOM_1497400 PE=3 SV=1
Gene Ontology
ID GO:0016020
description mate efflux family protein lal5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_290 0.0 - - multidrug resistance pump, putative [Ricinus communis]
2 Hb_000215_120 0.0783050533 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
3 Hb_007264_050 0.0837481663 - - -
4 Hb_009740_010 0.0893672402 - - receptor-kinase, putative [Ricinus communis]
5 Hb_001766_090 0.0914669659 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
6 Hb_106595_010 0.09625281 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
7 Hb_044724_020 0.0970439711 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Fragaria vesca subsp. vesca]
8 Hb_128894_010 0.0973615877 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_000215_380 0.0990644214 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
10 Hb_007328_020 0.0993932395 - - -
11 Hb_000563_370 0.0995934469 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
12 Hb_030593_010 0.09991697 - - hypothetical protein JCGZ_06063 [Jatropha curcas]
13 Hb_023827_010 0.1006278556 - - Cucumber peeling cupredoxin, putative [Ricinus communis]
14 Hb_034558_010 0.1009258507 - - -
15 Hb_030312_060 0.1069112872 - - PREDICTED: uncharacterized protein LOC105634226 [Jatropha curcas]
16 Hb_001796_010 0.1087074725 - - purine transporter, putative [Ricinus communis]
17 Hb_004059_010 0.1094408849 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
18 Hb_064583_010 0.1095896371 - - PREDICTED: germin-like protein subfamily 1 member 7 [Vitis vinifera]
19 Hb_000871_020 0.1140197386 - - receptor-kinase, putative [Ricinus communis]
20 Hb_099085_010 0.1174492122 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]

Gene co-expression network

sample Hb_000016_290 Hb_000016_290 Hb_000215_120 Hb_000215_120 Hb_000016_290--Hb_000215_120 Hb_007264_050 Hb_007264_050 Hb_000016_290--Hb_007264_050 Hb_009740_010 Hb_009740_010 Hb_000016_290--Hb_009740_010 Hb_001766_090 Hb_001766_090 Hb_000016_290--Hb_001766_090 Hb_106595_010 Hb_106595_010 Hb_000016_290--Hb_106595_010 Hb_044724_020 Hb_044724_020 Hb_000016_290--Hb_044724_020 Hb_004059_010 Hb_004059_010 Hb_000215_120--Hb_004059_010 Hb_001796_010 Hb_001796_010 Hb_000215_120--Hb_001796_010 Hb_186671_020 Hb_186671_020 Hb_000215_120--Hb_186671_020 Hb_005687_020 Hb_005687_020 Hb_000215_120--Hb_005687_020 Hb_018609_010 Hb_018609_010 Hb_000215_120--Hb_018609_010 Hb_000215_380 Hb_000215_380 Hb_007264_050--Hb_000215_380 Hb_007328_020 Hb_007328_020 Hb_007264_050--Hb_007328_020 Hb_000563_370 Hb_000563_370 Hb_007264_050--Hb_000563_370 Hb_007264_050--Hb_044724_020 Hb_007264_050--Hb_106595_010 Hb_064583_010 Hb_064583_010 Hb_007264_050--Hb_064583_010 Hb_023827_010 Hb_023827_010 Hb_009740_010--Hb_023827_010 Hb_000871_020 Hb_000871_020 Hb_009740_010--Hb_000871_020 Hb_030593_010 Hb_030593_010 Hb_009740_010--Hb_030593_010 Hb_009740_010--Hb_001766_090 Hb_007658_030 Hb_007658_030 Hb_009740_010--Hb_007658_030 Hb_000484_050 Hb_000484_050 Hb_009740_010--Hb_000484_050 Hb_001766_090--Hb_030593_010 Hb_034558_010 Hb_034558_010 Hb_001766_090--Hb_034558_010 Hb_001766_090--Hb_023827_010 Hb_001766_090--Hb_007658_030 Hb_128894_010 Hb_128894_010 Hb_001766_090--Hb_128894_010 Hb_001766_090--Hb_000484_050 Hb_106595_010--Hb_044724_020 Hb_106595_010--Hb_128894_010 Hb_106595_010--Hb_000215_380 Hb_106595_010--Hb_007328_020 Hb_106595_010--Hb_000563_370 Hb_106595_010--Hb_034558_010 Hb_044724_020--Hb_000215_380 Hb_044724_020--Hb_007328_020 Hb_044724_020--Hb_000563_370 Hb_044724_020--Hb_128894_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 14.9593 0.0181805 0.138175 0.0245001 0.066971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0437954 0 0.593597 0

CAGE analysis