Hb_007658_030

Information

Type -
Description -
Location Contig7658: 15819-27035
Sequence    

Annotation

kegg
ID rcu:RCOM_0010700
description Cycloartenol synthase, putative (EC:5.4.99.8)
nr
ID XP_011034490.1
description PREDICTED: lupeol synthase-like isoform X1 [Populus euphratica]
swissprot
ID A8CDT3
description Lupeol synthase OS=Bruguiera gymnorhiza GN=LUS PE=1 SV=1
trembl
ID B9SWS3
description Terpene cyclase/mutase family member OS=Ricinus communis GN=RCOM_0010700 PE=3 SV=1
Gene Ontology
ID GO:0042299
description beta-amyrin synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57407: 26169-27087
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007658_030 0.0 - - PREDICTED: lupeol synthase-like isoform X1 [Populus euphratica]
2 Hb_000484_050 0.0073440967 - - hypothetical protein CICLE_v10028549mg [Citrus clementina]
3 Hb_011909_130 0.0253614408 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
4 Hb_034558_010 0.0387961375 - - -
5 Hb_030593_010 0.0398733125 - - hypothetical protein JCGZ_06063 [Jatropha curcas]
6 Hb_001766_090 0.0462775902 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
7 Hb_128894_010 0.0545029573 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_023827_010 0.0584282637 - - Cucumber peeling cupredoxin, putative [Ricinus communis]
9 Hb_011639_130 0.0618695192 - - mads box protein, putative [Ricinus communis]
10 Hb_004829_050 0.0632569073 - - hypothetical protein TRIUR3_09654 [Triticum urartu]
11 Hb_106595_010 0.0696295187 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
12 Hb_001403_100 0.0709839716 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
13 Hb_001104_260 0.0714295677 - - hypothetical protein JCGZ_23628 [Jatropha curcas]
14 Hb_009740_010 0.0732272137 - - receptor-kinase, putative [Ricinus communis]
15 Hb_030312_060 0.0795959291 - - PREDICTED: uncharacterized protein LOC105634226 [Jatropha curcas]
16 Hb_044724_020 0.0812536106 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Fragaria vesca subsp. vesca]
17 Hb_005204_030 0.0814173364 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
18 Hb_008078_040 0.0855700857 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
19 Hb_000756_040 0.0869239978 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
20 Hb_000764_060 0.0909591656 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]

Gene co-expression network

sample Hb_007658_030 Hb_007658_030 Hb_000484_050 Hb_000484_050 Hb_007658_030--Hb_000484_050 Hb_011909_130 Hb_011909_130 Hb_007658_030--Hb_011909_130 Hb_034558_010 Hb_034558_010 Hb_007658_030--Hb_034558_010 Hb_030593_010 Hb_030593_010 Hb_007658_030--Hb_030593_010 Hb_001766_090 Hb_001766_090 Hb_007658_030--Hb_001766_090 Hb_128894_010 Hb_128894_010 Hb_007658_030--Hb_128894_010 Hb_000484_050--Hb_011909_130 Hb_000484_050--Hb_030593_010 Hb_000484_050--Hb_034558_010 Hb_000484_050--Hb_001766_090 Hb_011639_130 Hb_011639_130 Hb_000484_050--Hb_011639_130 Hb_011909_130--Hb_011639_130 Hb_004829_050 Hb_004829_050 Hb_011909_130--Hb_004829_050 Hb_001403_100 Hb_001403_100 Hb_011909_130--Hb_001403_100 Hb_001104_260 Hb_001104_260 Hb_011909_130--Hb_001104_260 Hb_034558_010--Hb_128894_010 Hb_106595_010 Hb_106595_010 Hb_034558_010--Hb_106595_010 Hb_034558_010--Hb_001766_090 Hb_044724_020 Hb_044724_020 Hb_034558_010--Hb_044724_020 Hb_023827_010 Hb_023827_010 Hb_030593_010--Hb_023827_010 Hb_030593_010--Hb_001766_090 Hb_030593_010--Hb_011909_130 Hb_009740_010 Hb_009740_010 Hb_030593_010--Hb_009740_010 Hb_001766_090--Hb_023827_010 Hb_001766_090--Hb_128894_010 Hb_128894_010--Hb_106595_010 Hb_128894_010--Hb_044724_020 Hb_000215_380 Hb_000215_380 Hb_128894_010--Hb_000215_380 Hb_007328_020 Hb_007328_020 Hb_128894_010--Hb_007328_020 Hb_000563_370 Hb_000563_370 Hb_128894_010--Hb_000563_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.493699 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0403105 0

CAGE analysis