Hb_011639_130

Information

Type -
Description -
Location Contig11639: 105998-115381
Sequence    

Annotation

kegg
ID rcu:RCOM_0818130
description mads box protein, putative (EC:1.3.1.74)
nr
ID XP_002518331.1
description mads box protein, putative [Ricinus communis]
swissprot
ID A2RVQ5
description Agamous-like MADS-box protein AGL16 OS=Arabidopsis thaliana GN=AGL16 PE=1 SV=1
trembl
ID B9RX62
description Mads box protein, putative OS=Ricinus communis GN=RCOM_0818130 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads-box transcription factor 23-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05077: 106385-106862
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011639_130 0.0 - - mads box protein, putative [Ricinus communis]
2 Hb_004829_050 0.0013956798 - - hypothetical protein TRIUR3_09654 [Triticum urartu]
3 Hb_001403_100 0.0091744247 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
4 Hb_001104_260 0.0096232783 - - hypothetical protein JCGZ_23628 [Jatropha curcas]
5 Hb_005204_030 0.0196916216 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
6 Hb_008078_040 0.0238819681 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
7 Hb_000756_040 0.0252486364 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
8 Hb_000764_060 0.0293232391 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
9 Hb_007676_070 0.0307886578 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]
10 Hb_068447_010 0.0344865943 - - protein with unknown function [Ricinus communis]
11 Hb_011909_130 0.0366042548 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
12 Hb_011924_010 0.0471703738 - - hypothetical protein, partial [Phaeodactylibacter xiamenensis]
13 Hb_101778_020 0.0540456563 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
14 Hb_000484_050 0.0545689673 - - hypothetical protein CICLE_v10028549mg [Citrus clementina]
15 Hb_006586_020 0.0583236823 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
16 Hb_007658_030 0.0618695192 - - PREDICTED: lupeol synthase-like isoform X1 [Populus euphratica]
17 Hb_000123_320 0.0656422462 - - PREDICTED: MADS-box protein FLOWERING LOCUS C-like [Jatropha curcas]
18 Hb_003430_010 0.0671378821 - - xyloglucan endotransglucosylase/hydrolase protein 33 precursor [Populus trichocarpa]
19 Hb_001271_040 0.0676332485 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
20 Hb_064855_010 0.0726970038 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_011639_130 Hb_011639_130 Hb_004829_050 Hb_004829_050 Hb_011639_130--Hb_004829_050 Hb_001403_100 Hb_001403_100 Hb_011639_130--Hb_001403_100 Hb_001104_260 Hb_001104_260 Hb_011639_130--Hb_001104_260 Hb_005204_030 Hb_005204_030 Hb_011639_130--Hb_005204_030 Hb_008078_040 Hb_008078_040 Hb_011639_130--Hb_008078_040 Hb_000756_040 Hb_000756_040 Hb_011639_130--Hb_000756_040 Hb_004829_050--Hb_001403_100 Hb_004829_050--Hb_001104_260 Hb_004829_050--Hb_005204_030 Hb_004829_050--Hb_008078_040 Hb_004829_050--Hb_000756_040 Hb_001403_100--Hb_001104_260 Hb_001403_100--Hb_005204_030 Hb_001403_100--Hb_008078_040 Hb_001403_100--Hb_000756_040 Hb_001104_260--Hb_005204_030 Hb_001104_260--Hb_008078_040 Hb_001104_260--Hb_000756_040 Hb_005204_030--Hb_008078_040 Hb_005204_030--Hb_000756_040 Hb_000764_060 Hb_000764_060 Hb_005204_030--Hb_000764_060 Hb_007676_070 Hb_007676_070 Hb_005204_030--Hb_007676_070 Hb_008078_040--Hb_000756_040 Hb_008078_040--Hb_000764_060 Hb_008078_040--Hb_007676_070 Hb_068447_010 Hb_068447_010 Hb_008078_040--Hb_068447_010 Hb_000756_040--Hb_000764_060 Hb_000756_040--Hb_007676_070 Hb_000756_040--Hb_068447_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.314276 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0422221 0

CAGE analysis