Hb_007676_070

Information

Type -
Description -
Location Contig7676: 111272-111849
Sequence    

Annotation

kegg
ID pop:POPTR_0001s04990g
description POPTRDRAFT_639715; microsomal omega-6 desaturase family protein
nr
ID XP_011037927.1
description PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]
swissprot
ID P48631
description Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1
trembl
ID B9GLL6
description Microsomal omega-6 desaturase family protein OS=Populus trichocarpa GN=POPTR_0001s04990g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007676_070 0.0 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]
2 Hb_000764_060 0.0014669356 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
3 Hb_068447_010 0.0037023883 - - protein with unknown function [Ricinus communis]
4 Hb_000756_040 0.0055450032 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
5 Hb_008078_040 0.0069125819 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
6 Hb_005204_030 0.0111049139 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
7 Hb_011924_010 0.0164079635 - - hypothetical protein, partial [Phaeodactylibacter xiamenensis]
8 Hb_001104_260 0.0211728864 - - hypothetical protein JCGZ_23628 [Jatropha curcas]
9 Hb_001403_100 0.0216215489 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
10 Hb_101778_020 0.02329907 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
11 Hb_006586_020 0.0275882903 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
12 Hb_004829_050 0.0293945178 - - hypothetical protein TRIUR3_09654 [Triticum urartu]
13 Hb_011639_130 0.0307886578 - - mads box protein, putative [Ricinus communis]
14 Hb_000123_320 0.0349283041 - - PREDICTED: MADS-box protein FLOWERING LOCUS C-like [Jatropha curcas]
15 Hb_003430_010 0.0364286702 - - xyloglucan endotransglucosylase/hydrolase protein 33 precursor [Populus trichocarpa]
16 Hb_003392_020 0.0429903026 - - PREDICTED: uncharacterized protein LOC105650609 [Jatropha curcas]
17 Hb_006011_060 0.0436729266 - - -
18 Hb_001271_040 0.0472227528 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
19 Hb_008248_010 0.0515004462 - - -
20 Hb_185340_020 0.0593024803 - - -

Gene co-expression network

sample Hb_007676_070 Hb_007676_070 Hb_000764_060 Hb_000764_060 Hb_007676_070--Hb_000764_060 Hb_068447_010 Hb_068447_010 Hb_007676_070--Hb_068447_010 Hb_000756_040 Hb_000756_040 Hb_007676_070--Hb_000756_040 Hb_008078_040 Hb_008078_040 Hb_007676_070--Hb_008078_040 Hb_005204_030 Hb_005204_030 Hb_007676_070--Hb_005204_030 Hb_011924_010 Hb_011924_010 Hb_007676_070--Hb_011924_010 Hb_000764_060--Hb_000756_040 Hb_000764_060--Hb_068447_010 Hb_000764_060--Hb_008078_040 Hb_000764_060--Hb_005204_030 Hb_000764_060--Hb_011924_010 Hb_068447_010--Hb_000756_040 Hb_068447_010--Hb_008078_040 Hb_068447_010--Hb_011924_010 Hb_068447_010--Hb_005204_030 Hb_000756_040--Hb_008078_040 Hb_000756_040--Hb_005204_030 Hb_001104_260 Hb_001104_260 Hb_000756_040--Hb_001104_260 Hb_008078_040--Hb_005204_030 Hb_008078_040--Hb_001104_260 Hb_005204_030--Hb_001104_260 Hb_001403_100 Hb_001403_100 Hb_005204_030--Hb_001403_100 Hb_101778_020 Hb_101778_020 Hb_011924_010--Hb_101778_020 Hb_006586_020 Hb_006586_020 Hb_011924_010--Hb_006586_020 Hb_000123_320 Hb_000123_320 Hb_011924_010--Hb_000123_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.71748 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.119577 0

CAGE analysis