Hb_101778_020

Information

Type transcription factor
Description TF Family: SRS
Location Contig101778: 22334-23224
Sequence    

Annotation

kegg
ID rcu:RCOM_1449160
description hypothetical protein
nr
ID XP_002512967.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD40
description Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=SRS1 PE=1 SV=2
trembl
ID B9RHA8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1449160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101778_020 0.0 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
2 Hb_006586_020 0.0042918736 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
3 Hb_011924_010 0.0068936994 - - hypothetical protein, partial [Phaeodactylibacter xiamenensis]
4 Hb_000123_320 0.0116382097 - - PREDICTED: MADS-box protein FLOWERING LOCUS C-like [Jatropha curcas]
5 Hb_003430_010 0.0131401376 - - xyloglucan endotransglucosylase/hydrolase protein 33 precursor [Populus trichocarpa]
6 Hb_068447_010 0.0195983889 - - protein with unknown function [Ricinus communis]
7 Hb_003392_020 0.019709642 - - PREDICTED: uncharacterized protein LOC105650609 [Jatropha curcas]
8 Hb_006011_060 0.0203931806 - - -
9 Hb_007676_070 0.02329907 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]
10 Hb_000764_060 0.0247651418 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
11 Hb_008248_010 0.0282324364 - - -
12 Hb_000756_040 0.0288402382 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
13 Hb_008078_040 0.0302066302 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
14 Hb_005204_030 0.0343947177 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
15 Hb_185340_020 0.0360483797 - - -
16 Hb_007259_030 0.0363310966 - - -
17 Hb_001271_040 0.0413623877 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
18 Hb_001104_260 0.0444486391 - - hypothetical protein JCGZ_23628 [Jatropha curcas]
19 Hb_001403_100 0.0448965449 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
20 Hb_004829_050 0.0526545702 - - hypothetical protein TRIUR3_09654 [Triticum urartu]

Gene co-expression network

sample Hb_101778_020 Hb_101778_020 Hb_006586_020 Hb_006586_020 Hb_101778_020--Hb_006586_020 Hb_011924_010 Hb_011924_010 Hb_101778_020--Hb_011924_010 Hb_000123_320 Hb_000123_320 Hb_101778_020--Hb_000123_320 Hb_003430_010 Hb_003430_010 Hb_101778_020--Hb_003430_010 Hb_068447_010 Hb_068447_010 Hb_101778_020--Hb_068447_010 Hb_003392_020 Hb_003392_020 Hb_101778_020--Hb_003392_020 Hb_006586_020--Hb_000123_320 Hb_006586_020--Hb_003430_010 Hb_006586_020--Hb_011924_010 Hb_006586_020--Hb_003392_020 Hb_006011_060 Hb_006011_060 Hb_006586_020--Hb_006011_060 Hb_011924_010--Hb_068447_010 Hb_007676_070 Hb_007676_070 Hb_011924_010--Hb_007676_070 Hb_000764_060 Hb_000764_060 Hb_011924_010--Hb_000764_060 Hb_011924_010--Hb_000123_320 Hb_000123_320--Hb_003430_010 Hb_000123_320--Hb_003392_020 Hb_000123_320--Hb_006011_060 Hb_008248_010 Hb_008248_010 Hb_000123_320--Hb_008248_010 Hb_003430_010--Hb_003392_020 Hb_003430_010--Hb_006011_060 Hb_003430_010--Hb_008248_010 Hb_068447_010--Hb_007676_070 Hb_068447_010--Hb_000764_060 Hb_000756_040 Hb_000756_040 Hb_068447_010--Hb_000756_040 Hb_008078_040 Hb_008078_040 Hb_068447_010--Hb_008078_040 Hb_005204_030 Hb_005204_030 Hb_068447_010--Hb_005204_030 Hb_003392_020--Hb_006011_060 Hb_003392_020--Hb_008248_010 Hb_185340_020 Hb_185340_020 Hb_003392_020--Hb_185340_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.484169 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0940013 0

CAGE analysis