Hb_003430_010

Information

Type -
Description -
Location Contig3430: 7230-8322
Sequence    

Annotation

kegg
ID pop:POPTR_0014s11030g
description POPTRDRAFT_731607; xyloglucan endotransglucosylase/hydrolase protein 33 precursor
nr
ID XP_002320268.2
description xyloglucan endotransglucosylase/hydrolase protein 33 precursor [Populus trichocarpa]
swissprot
ID Q8LC45
description Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2
trembl
ID B9I9D4
description Xyloglucan endotransglucosylase/hydrolase OS=Populus trichocarpa GN=POPTR_0014s11030g PE=3 SV=2
Gene Ontology
ID GO:0003824
description probable xyloglucan endotransglucosylase hydrolase protein 33

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003430_010 0.0 - - xyloglucan endotransglucosylase/hydrolase protein 33 precursor [Populus trichocarpa]
2 Hb_000123_320 0.0015021306 - - PREDICTED: MADS-box protein FLOWERING LOCUS C-like [Jatropha curcas]
3 Hb_003392_020 0.0065709833 - - PREDICTED: uncharacterized protein LOC105650609 [Jatropha curcas]
4 Hb_006011_060 0.0072547301 - - -
5 Hb_006586_020 0.0088487106 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
6 Hb_101778_020 0.0131401376 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
7 Hb_008248_010 0.0150970873 - - -
8 Hb_011924_010 0.020032177 - - hypothetical protein, partial [Phaeodactylibacter xiamenensis]
9 Hb_185340_020 0.0229173871 - - -
10 Hb_007259_030 0.0232002845 - - -
11 Hb_068447_010 0.0327306206 - - protein with unknown function [Ricinus communis]
12 Hb_007676_070 0.0364286702 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]
13 Hb_000764_060 0.0378935945 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
14 Hb_000756_040 0.0419651837 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
15 Hb_008078_040 0.0433302936 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
16 Hb_001271_040 0.0435438879 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
17 Hb_005204_030 0.0475141132 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
18 Hb_123238_010 0.0540517191 - - hypothetical protein JCGZ_16598 [Jatropha curcas]
19 Hb_083270_010 0.0542246942 - - hypothetical protein ARALYDRAFT_896220 [Arabidopsis lyrata subsp. lyrata]
20 Hb_003344_020 0.0560704506 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis melo]

Gene co-expression network

sample Hb_003430_010 Hb_003430_010 Hb_000123_320 Hb_000123_320 Hb_003430_010--Hb_000123_320 Hb_003392_020 Hb_003392_020 Hb_003430_010--Hb_003392_020 Hb_006011_060 Hb_006011_060 Hb_003430_010--Hb_006011_060 Hb_006586_020 Hb_006586_020 Hb_003430_010--Hb_006586_020 Hb_101778_020 Hb_101778_020 Hb_003430_010--Hb_101778_020 Hb_008248_010 Hb_008248_010 Hb_003430_010--Hb_008248_010 Hb_000123_320--Hb_006586_020 Hb_000123_320--Hb_003392_020 Hb_000123_320--Hb_006011_060 Hb_000123_320--Hb_101778_020 Hb_000123_320--Hb_008248_010 Hb_003392_020--Hb_006011_060 Hb_003392_020--Hb_008248_010 Hb_003392_020--Hb_006586_020 Hb_185340_020 Hb_185340_020 Hb_003392_020--Hb_185340_020 Hb_006011_060--Hb_008248_010 Hb_006011_060--Hb_185340_020 Hb_007259_030 Hb_007259_030 Hb_006011_060--Hb_007259_030 Hb_006586_020--Hb_101778_020 Hb_011924_010 Hb_011924_010 Hb_006586_020--Hb_011924_010 Hb_006586_020--Hb_006011_060 Hb_101778_020--Hb_011924_010 Hb_068447_010 Hb_068447_010 Hb_101778_020--Hb_068447_010 Hb_101778_020--Hb_003392_020 Hb_008248_010--Hb_185340_020 Hb_008248_010--Hb_007259_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.184208 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0388478 0

CAGE analysis