Hb_011924_010

Information

Type -
Description -
Location Contig11924: 15-997
Sequence    

Annotation

kegg
ID cic:CICLE_v100136772m
description hypothetical protein
nr
ID WP_044228050.1
description hypothetical protein, partial [Phaeodactylibacter xiamenensis]
swissprot
ID C0LGF4
description LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1
trembl
ID D7FJQ6
description Hypothetical leucine rich repeat protein OS=Ectocarpus siliculosus GN=Esi_0136_0025 PE=4 SV=1
Gene Ontology
ID GO:0050896
description probable leucine-rich repeat receptor-like protein kinase at1g35710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011924_010 0.0 - - hypothetical protein, partial [Phaeodactylibacter xiamenensis]
2 Hb_101778_020 0.0068936994 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
3 Hb_006586_020 0.011185265 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
4 Hb_068447_010 0.0127063659 - - protein with unknown function [Ricinus communis]
5 Hb_007676_070 0.0164079635 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]
6 Hb_000764_060 0.0178744536 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
7 Hb_000123_320 0.018530545 - - PREDICTED: MADS-box protein FLOWERING LOCUS C-like [Jatropha curcas]
8 Hb_003430_010 0.020032177 - - xyloglucan endotransglucosylase/hydrolase protein 33 precursor [Populus trichocarpa]
9 Hb_000756_040 0.0219508811 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
10 Hb_008078_040 0.0233177755 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
11 Hb_003392_020 0.0266000774 - - PREDICTED: uncharacterized protein LOC105650609 [Jatropha curcas]
12 Hb_006011_060 0.0272834206 - - -
13 Hb_005204_030 0.0275075819 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
14 Hb_008248_010 0.0351200645 - - -
15 Hb_001104_260 0.0375667653 - - hypothetical protein JCGZ_23628 [Jatropha curcas]
16 Hb_001403_100 0.0380149439 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
17 Hb_001271_040 0.0418514332 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
18 Hb_185340_020 0.0429327446 - - -
19 Hb_007259_030 0.0432153315 - - -
20 Hb_004829_050 0.0457782339 - - hypothetical protein TRIUR3_09654 [Triticum urartu]

Gene co-expression network

sample Hb_011924_010 Hb_011924_010 Hb_101778_020 Hb_101778_020 Hb_011924_010--Hb_101778_020 Hb_006586_020 Hb_006586_020 Hb_011924_010--Hb_006586_020 Hb_068447_010 Hb_068447_010 Hb_011924_010--Hb_068447_010 Hb_007676_070 Hb_007676_070 Hb_011924_010--Hb_007676_070 Hb_000764_060 Hb_000764_060 Hb_011924_010--Hb_000764_060 Hb_000123_320 Hb_000123_320 Hb_011924_010--Hb_000123_320 Hb_101778_020--Hb_006586_020 Hb_101778_020--Hb_000123_320 Hb_003430_010 Hb_003430_010 Hb_101778_020--Hb_003430_010 Hb_101778_020--Hb_068447_010 Hb_003392_020 Hb_003392_020 Hb_101778_020--Hb_003392_020 Hb_006586_020--Hb_000123_320 Hb_006586_020--Hb_003430_010 Hb_006586_020--Hb_003392_020 Hb_006011_060 Hb_006011_060 Hb_006586_020--Hb_006011_060 Hb_068447_010--Hb_007676_070 Hb_068447_010--Hb_000764_060 Hb_000756_040 Hb_000756_040 Hb_068447_010--Hb_000756_040 Hb_008078_040 Hb_008078_040 Hb_068447_010--Hb_008078_040 Hb_005204_030 Hb_005204_030 Hb_068447_010--Hb_005204_030 Hb_007676_070--Hb_000764_060 Hb_007676_070--Hb_000756_040 Hb_007676_070--Hb_008078_040 Hb_007676_070--Hb_005204_030 Hb_000764_060--Hb_000756_040 Hb_000764_060--Hb_008078_040 Hb_000764_060--Hb_005204_030 Hb_000123_320--Hb_003430_010 Hb_000123_320--Hb_003392_020 Hb_000123_320--Hb_006011_060 Hb_008248_010 Hb_008248_010 Hb_000123_320--Hb_008248_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.740967 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.137621 0

CAGE analysis