Hb_008078_040

Information

Type -
Description -
Location Contig8078: 53739-59646
Sequence    

Annotation

kegg
ID sita:101759474
description uncharacterized LOC101759474
nr
ID XP_012438868.1
description PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2PYA6
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G198600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008078_040 0.0 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
2 Hb_000756_040 0.0013676361 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
3 Hb_005204_030 0.0041926895 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
4 Hb_000764_060 0.0054457063 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
5 Hb_007676_070 0.0069125819 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]
6 Hb_068447_010 0.0106146779 - - protein with unknown function [Ricinus communis]
7 Hb_001104_260 0.0142626742 - - hypothetical protein JCGZ_23628 [Jatropha curcas]
8 Hb_001403_100 0.0147114654 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
9 Hb_004829_050 0.0224872166 - - hypothetical protein TRIUR3_09654 [Triticum urartu]
10 Hb_011924_010 0.0233177755 - - hypothetical protein, partial [Phaeodactylibacter xiamenensis]
11 Hb_011639_130 0.0238819681 - - mads box protein, putative [Ricinus communis]
12 Hb_101778_020 0.0302066302 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
13 Hb_006586_020 0.0344941427 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
14 Hb_000123_320 0.0418307108 - - PREDICTED: MADS-box protein FLOWERING LOCUS C-like [Jatropha curcas]
15 Hb_003430_010 0.0433302936 - - xyloglucan endotransglucosylase/hydrolase protein 33 precursor [Populus trichocarpa]
16 Hb_003392_020 0.0498881956 - - PREDICTED: uncharacterized protein LOC105650609 [Jatropha curcas]
17 Hb_006011_060 0.0505704036 - - -
18 Hb_001271_040 0.0509138734 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
19 Hb_008248_010 0.058392789 - - -
20 Hb_011909_130 0.0604148325 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]

Gene co-expression network

sample Hb_008078_040 Hb_008078_040 Hb_000756_040 Hb_000756_040 Hb_008078_040--Hb_000756_040 Hb_005204_030 Hb_005204_030 Hb_008078_040--Hb_005204_030 Hb_000764_060 Hb_000764_060 Hb_008078_040--Hb_000764_060 Hb_007676_070 Hb_007676_070 Hb_008078_040--Hb_007676_070 Hb_068447_010 Hb_068447_010 Hb_008078_040--Hb_068447_010 Hb_001104_260 Hb_001104_260 Hb_008078_040--Hb_001104_260 Hb_000756_040--Hb_000764_060 Hb_000756_040--Hb_007676_070 Hb_000756_040--Hb_005204_030 Hb_000756_040--Hb_068447_010 Hb_000756_040--Hb_001104_260 Hb_005204_030--Hb_000764_060 Hb_005204_030--Hb_001104_260 Hb_001403_100 Hb_001403_100 Hb_005204_030--Hb_001403_100 Hb_005204_030--Hb_007676_070 Hb_000764_060--Hb_007676_070 Hb_000764_060--Hb_068447_010 Hb_011924_010 Hb_011924_010 Hb_000764_060--Hb_011924_010 Hb_007676_070--Hb_068447_010 Hb_007676_070--Hb_011924_010 Hb_068447_010--Hb_011924_010 Hb_068447_010--Hb_005204_030 Hb_001104_260--Hb_001403_100 Hb_004829_050 Hb_004829_050 Hb_001104_260--Hb_004829_050 Hb_011639_130 Hb_011639_130 Hb_001104_260--Hb_011639_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0219861 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00349633 0

CAGE analysis