Hb_001403_100

Information

Type -
Description -
Location Contig1403: 133727-137679
Sequence    

Annotation

kegg
ID fve:101300105
description ankyrin repeat-containing protein At3g12360-like
nr
ID XP_006448675.1
description hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4UCM2
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10017457mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001403_100 0.0 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
2 Hb_001104_260 0.0004489034 - - hypothetical protein JCGZ_23628 [Jatropha curcas]
3 Hb_004829_050 0.0077788725 - - hypothetical protein TRIUR3_09654 [Triticum urartu]
4 Hb_011639_130 0.0091744247 - - mads box protein, putative [Ricinus communis]
5 Hb_005204_030 0.0105195315 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
6 Hb_008078_040 0.0147114654 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
7 Hb_000756_040 0.0160787295 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
8 Hb_000764_060 0.0201553311 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
9 Hb_007676_070 0.0216215489 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]
10 Hb_068447_010 0.0253216867 - - protein with unknown function [Ricinus communis]
11 Hb_011924_010 0.0380149439 - - hypothetical protein, partial [Phaeodactylibacter xiamenensis]
12 Hb_101778_020 0.0448965449 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
13 Hb_011909_130 0.0457571557 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
14 Hb_006586_020 0.0491788983 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
15 Hb_000123_320 0.0565055389 - - PREDICTED: MADS-box protein FLOWERING LOCUS C-like [Jatropha curcas]
16 Hb_003430_010 0.0580029268 - - xyloglucan endotransglucosylase/hydrolase protein 33 precursor [Populus trichocarpa]
17 Hb_001271_040 0.0606577555 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
18 Hb_000484_050 0.0636967581 - - hypothetical protein CICLE_v10028549mg [Citrus clementina]
19 Hb_003392_020 0.0645505921 - - PREDICTED: uncharacterized protein LOC105650609 [Jatropha curcas]
20 Hb_006011_060 0.0652316767 - - -

Gene co-expression network

sample Hb_001403_100 Hb_001403_100 Hb_001104_260 Hb_001104_260 Hb_001403_100--Hb_001104_260 Hb_004829_050 Hb_004829_050 Hb_001403_100--Hb_004829_050 Hb_011639_130 Hb_011639_130 Hb_001403_100--Hb_011639_130 Hb_005204_030 Hb_005204_030 Hb_001403_100--Hb_005204_030 Hb_008078_040 Hb_008078_040 Hb_001403_100--Hb_008078_040 Hb_000756_040 Hb_000756_040 Hb_001403_100--Hb_000756_040 Hb_001104_260--Hb_004829_050 Hb_001104_260--Hb_011639_130 Hb_001104_260--Hb_005204_030 Hb_001104_260--Hb_008078_040 Hb_001104_260--Hb_000756_040 Hb_004829_050--Hb_011639_130 Hb_004829_050--Hb_005204_030 Hb_004829_050--Hb_008078_040 Hb_004829_050--Hb_000756_040 Hb_011639_130--Hb_005204_030 Hb_011639_130--Hb_008078_040 Hb_011639_130--Hb_000756_040 Hb_005204_030--Hb_008078_040 Hb_005204_030--Hb_000756_040 Hb_000764_060 Hb_000764_060 Hb_005204_030--Hb_000764_060 Hb_007676_070 Hb_007676_070 Hb_005204_030--Hb_007676_070 Hb_008078_040--Hb_000756_040 Hb_008078_040--Hb_000764_060 Hb_008078_040--Hb_007676_070 Hb_068447_010 Hb_068447_010 Hb_008078_040--Hb_068447_010 Hb_000756_040--Hb_000764_060 Hb_000756_040--Hb_007676_070 Hb_000756_040--Hb_068447_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0947418 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0135971 0

CAGE analysis