Hb_008248_010

Information

Type -
Description -
Location Contig8248: 5524-5888
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008248_010 0.0 - - -
2 Hb_185340_020 0.0078224641 - - -
3 Hb_006011_060 0.0078430642 - - -
4 Hb_007259_030 0.0081054664 - - -
5 Hb_003392_020 0.0085268011 - - PREDICTED: uncharacterized protein LOC105650609 [Jatropha curcas]
6 Hb_003430_010 0.0150970873 - - xyloglucan endotransglucosylase/hydrolase protein 33 precursor [Populus trichocarpa]
7 Hb_000123_320 0.0165989031 - - PREDICTED: MADS-box protein FLOWERING LOCUS C-like [Jatropha curcas]
8 Hb_006586_020 0.0239430852 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
9 Hb_101778_020 0.0282324364 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
10 Hb_011924_010 0.0351200645 - - hypothetical protein, partial [Phaeodactylibacter xiamenensis]
11 Hb_123238_010 0.0389786825 - - hypothetical protein JCGZ_16598 [Jatropha curcas]
12 Hb_003344_020 0.040999512 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501197 [Cucumis melo]
13 Hb_001659_030 0.0424514494 - - -
14 Hb_080293_010 0.0471886383 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Nelumbo nucifera]
15 Hb_068447_010 0.0478067462 - - protein with unknown function [Ricinus communis]
16 Hb_001271_040 0.0503402217 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
17 Hb_083270_010 0.0513836606 - - hypothetical protein ARALYDRAFT_896220 [Arabidopsis lyrata subsp. lyrata]
18 Hb_007676_070 0.0515004462 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]
19 Hb_000002_160 0.0515238161 - - Uncharacterized protein TCM_021030 [Theobroma cacao]
20 Hb_000764_060 0.0529635285 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]

Gene co-expression network

sample Hb_008248_010 Hb_008248_010 Hb_185340_020 Hb_185340_020 Hb_008248_010--Hb_185340_020 Hb_006011_060 Hb_006011_060 Hb_008248_010--Hb_006011_060 Hb_007259_030 Hb_007259_030 Hb_008248_010--Hb_007259_030 Hb_003392_020 Hb_003392_020 Hb_008248_010--Hb_003392_020 Hb_003430_010 Hb_003430_010 Hb_008248_010--Hb_003430_010 Hb_000123_320 Hb_000123_320 Hb_008248_010--Hb_000123_320 Hb_185340_020--Hb_007259_030 Hb_185340_020--Hb_006011_060 Hb_185340_020--Hb_003392_020 Hb_185340_020--Hb_003430_010 Hb_185340_020--Hb_000123_320 Hb_006011_060--Hb_003392_020 Hb_006011_060--Hb_003430_010 Hb_006011_060--Hb_000123_320 Hb_006011_060--Hb_007259_030 Hb_007259_030--Hb_003392_020 Hb_007259_030--Hb_003430_010 Hb_007259_030--Hb_000123_320 Hb_003392_020--Hb_003430_010 Hb_003392_020--Hb_000123_320 Hb_006586_020 Hb_006586_020 Hb_003392_020--Hb_006586_020 Hb_003430_010--Hb_000123_320 Hb_003430_010--Hb_006586_020 Hb_101778_020 Hb_101778_020 Hb_003430_010--Hb_101778_020 Hb_000123_320--Hb_006586_020 Hb_000123_320--Hb_101778_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.607768 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.140575 0

CAGE analysis