Hb_030593_010

Information

Type -
Description -
Location Contig30593: 17767-20015
Sequence    

Annotation

kegg
ID pop:POPTR_0001s146002
description hypothetical protein
nr
ID KDP37007.1
description hypothetical protein JCGZ_06063 [Jatropha curcas]
swissprot
ID A8CDT3
description Lupeol synthase OS=Bruguiera gymnorhiza GN=LUS PE=1 SV=1
trembl
ID A0A067KLJ2
description Terpene cyclase/mutase family member OS=Jatropha curcas GN=JCGZ_06063 PE=3 SV=1
Gene Ontology
ID GO:0042299
description lupeol synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030593_010 0.0 - - hypothetical protein JCGZ_06063 [Jatropha curcas]
2 Hb_023827_010 0.0237388501 - - Cucumber peeling cupredoxin, putative [Ricinus communis]
3 Hb_001766_090 0.0286424956 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
4 Hb_007658_030 0.0398733125 - - PREDICTED: lupeol synthase-like isoform X1 [Populus euphratica]
5 Hb_000484_050 0.0413718874 - - hypothetical protein CICLE_v10028549mg [Citrus clementina]
6 Hb_011909_130 0.0496604977 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
7 Hb_009740_010 0.0513926609 - - receptor-kinase, putative [Ricinus communis]
8 Hb_034558_010 0.0522967226 - - -
9 Hb_128894_010 0.0636804016 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_106595_010 0.0761216505 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
11 Hb_011639_130 0.0773230367 - - mads box protein, putative [Ricinus communis]
12 Hb_004829_050 0.0785155959 - - hypothetical protein TRIUR3_09654 [Triticum urartu]
13 Hb_064855_010 0.0847524217 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_000871_020 0.085155178 - - receptor-kinase, putative [Ricinus communis]
15 Hb_001403_100 0.0852635572 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
16 Hb_001104_260 0.0856576368 - - hypothetical protein JCGZ_23628 [Jatropha curcas]
17 Hb_044724_020 0.0862760811 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Fragaria vesca subsp. vesca]
18 Hb_030312_060 0.0865460165 - - PREDICTED: uncharacterized protein LOC105634226 [Jatropha curcas]
19 Hb_007264_050 0.0910401731 - - -
20 Hb_005204_030 0.094608059 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]

Gene co-expression network

sample Hb_030593_010 Hb_030593_010 Hb_023827_010 Hb_023827_010 Hb_030593_010--Hb_023827_010 Hb_001766_090 Hb_001766_090 Hb_030593_010--Hb_001766_090 Hb_007658_030 Hb_007658_030 Hb_030593_010--Hb_007658_030 Hb_000484_050 Hb_000484_050 Hb_030593_010--Hb_000484_050 Hb_011909_130 Hb_011909_130 Hb_030593_010--Hb_011909_130 Hb_009740_010 Hb_009740_010 Hb_030593_010--Hb_009740_010 Hb_023827_010--Hb_001766_090 Hb_023827_010--Hb_009740_010 Hb_023827_010--Hb_007658_030 Hb_023827_010--Hb_000484_050 Hb_023827_010--Hb_011909_130 Hb_034558_010 Hb_034558_010 Hb_001766_090--Hb_034558_010 Hb_001766_090--Hb_007658_030 Hb_128894_010 Hb_128894_010 Hb_001766_090--Hb_128894_010 Hb_001766_090--Hb_000484_050 Hb_007658_030--Hb_000484_050 Hb_007658_030--Hb_011909_130 Hb_007658_030--Hb_034558_010 Hb_007658_030--Hb_128894_010 Hb_000484_050--Hb_011909_130 Hb_000484_050--Hb_034558_010 Hb_011639_130 Hb_011639_130 Hb_000484_050--Hb_011639_130 Hb_011909_130--Hb_011639_130 Hb_004829_050 Hb_004829_050 Hb_011909_130--Hb_004829_050 Hb_001403_100 Hb_001403_100 Hb_011909_130--Hb_001403_100 Hb_001104_260 Hb_001104_260 Hb_011909_130--Hb_001104_260 Hb_000871_020 Hb_000871_020 Hb_009740_010--Hb_000871_020 Hb_009740_010--Hb_001766_090 Hb_009740_010--Hb_007658_030 Hb_009740_010--Hb_000484_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.38641 0 0.0318143 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.735132 0

CAGE analysis