Hb_000215_120

Information

Type -
Description -
Location Contig215: 95231-102380
Sequence    

Annotation

kegg
ID rcu:RCOM_1049340
description multidrug resistance protein 1, 2, putative (EC:3.6.3.44)
nr
ID XP_012076854.1
description PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
swissprot
ID Q9LHK4
description Putative ABC transporter B family member 8 OS=Arabidopsis thaliana GN=ABCB8 PE=5 SV=1
trembl
ID B9RKG7
description Multidrug resistance protein 1, 2, putative OS=Ricinus communis GN=RCOM_1049340 PE=3 SV=1
Gene Ontology
ID GO:0016021
description abc transporter b family member 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_120 0.0 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
2 Hb_004059_010 0.078301626 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
3 Hb_000016_290 0.0783050533 - - multidrug resistance pump, putative [Ricinus communis]
4 Hb_001796_010 0.0831148152 - - purine transporter, putative [Ricinus communis]
5 Hb_186671_020 0.0864522126 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_005687_020 0.1059246226 - - P66 protein [Hevea brasiliensis]
7 Hb_018609_010 0.1078042863 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004096_040 0.1090985692 - - cytochrome P450, putative [Ricinus communis]
9 Hb_163950_060 0.1098492875 - - multidrug resistance pump, putative [Ricinus communis]
10 Hb_007264_050 0.1108276894 - - -
11 Hb_000336_170 0.115520899 - - Polcalcin Jun o, putative [Ricinus communis]
12 Hb_011980_020 0.1188962215 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_064583_010 0.1194475542 - - PREDICTED: germin-like protein subfamily 1 member 7 [Vitis vinifera]
14 Hb_099085_010 0.1205373624 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
15 Hb_001985_010 0.1215950875 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000563_370 0.1222422849 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
17 Hb_007328_020 0.1224120238 - - -
18 Hb_000215_380 0.1227133533 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
19 Hb_000395_160 0.1229061643 - - hypothetical protein POPTR_0006s25490g [Populus trichocarpa]
20 Hb_005529_050 0.1243987726 - - PREDICTED: cytochrome P450 94B3-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_000215_120 Hb_000215_120 Hb_004059_010 Hb_004059_010 Hb_000215_120--Hb_004059_010 Hb_000016_290 Hb_000016_290 Hb_000215_120--Hb_000016_290 Hb_001796_010 Hb_001796_010 Hb_000215_120--Hb_001796_010 Hb_186671_020 Hb_186671_020 Hb_000215_120--Hb_186671_020 Hb_005687_020 Hb_005687_020 Hb_000215_120--Hb_005687_020 Hb_018609_010 Hb_018609_010 Hb_000215_120--Hb_018609_010 Hb_010368_040 Hb_010368_040 Hb_004059_010--Hb_010368_040 Hb_004059_010--Hb_001796_010 Hb_001190_020 Hb_001190_020 Hb_004059_010--Hb_001190_020 Hb_000879_100 Hb_000879_100 Hb_004059_010--Hb_000879_100 Hb_006519_010 Hb_006519_010 Hb_004059_010--Hb_006519_010 Hb_007264_050 Hb_007264_050 Hb_000016_290--Hb_007264_050 Hb_009740_010 Hb_009740_010 Hb_000016_290--Hb_009740_010 Hb_001766_090 Hb_001766_090 Hb_000016_290--Hb_001766_090 Hb_106595_010 Hb_106595_010 Hb_000016_290--Hb_106595_010 Hb_044724_020 Hb_044724_020 Hb_000016_290--Hb_044724_020 Hb_001796_010--Hb_186671_020 Hb_001796_010--Hb_018609_010 Hb_099085_010 Hb_099085_010 Hb_001796_010--Hb_099085_010 Hb_064583_010 Hb_064583_010 Hb_001796_010--Hb_064583_010 Hb_011980_020 Hb_011980_020 Hb_001796_010--Hb_011980_020 Hb_163950_060 Hb_163950_060 Hb_001796_010--Hb_163950_060 Hb_186671_020--Hb_163950_060 Hb_186671_020--Hb_018609_010 Hb_005050_010 Hb_005050_010 Hb_186671_020--Hb_005050_010 Hb_000395_160 Hb_000395_160 Hb_186671_020--Hb_000395_160 Hb_000979_270 Hb_000979_270 Hb_186671_020--Hb_000979_270 Hb_005687_020--Hb_000395_160 Hb_005687_020--Hb_163950_060 Hb_005687_020--Hb_011980_020 Hb_004096_040 Hb_004096_040 Hb_005687_020--Hb_004096_040 Hb_005687_020--Hb_186671_020 Hb_005687_020--Hb_001796_010 Hb_018609_010--Hb_005050_010 Hb_018609_010--Hb_099085_010 Hb_018609_010--Hb_000979_270 Hb_018609_010--Hb_064583_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0372153 20.751 0.0257345 0.397443 0.0599866 0.0386912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0109381 0.0258238 0 0.385276 0.0184441

CAGE analysis