Hb_054886_010

Information

Type -
Description -
Location Contig54886: 6007-9331
Sequence    

Annotation

kegg
ID rcu:RCOM_1711490
description hypothetical protein
nr
ID XP_002524154.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9CM71
description Protein TolB OS=Pasteurella multocida (strain Pm70) GN=tolB PE=3 SV=1
trembl
ID B9SDT5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1711490 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054886_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001985_010 0.1039678975 - - conserved hypothetical protein [Ricinus communis]
3 Hb_028487_080 0.1327728342 - - Pectinesterase-1 precursor, putative [Ricinus communis]
4 Hb_000414_100 0.1435891324 - - PREDICTED: uncharacterized protein LOC105643784 [Jatropha curcas]
5 Hb_027556_080 0.1447467438 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 [Jatropha curcas]
6 Hb_005529_050 0.1500569403 - - PREDICTED: cytochrome P450 94B3-like [Nelumbo nucifera]
7 Hb_001277_150 0.1543151206 - - hypothetical protein VITISV_043492 [Vitis vinifera]
8 Hb_000635_170 0.1551074016 - - cytochrome P450, putative [Ricinus communis]
9 Hb_001031_020 0.1554676714 - - hypothetical protein VITISV_000631 [Vitis vinifera]
10 Hb_000045_110 0.1563471523 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
11 Hb_004059_010 0.1585053685 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
12 Hb_000215_120 0.1591147484 - - PREDICTED: putative ABC transporter B family member 8 [Jatropha curcas]
13 Hb_001190_020 0.1596075616 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_010368_040 0.1609015564 - - conserved hypothetical protein [Ricinus communis]
15 Hb_033153_010 0.1620521452 - - PREDICTED: MLO-like protein 12 [Jatropha curcas]
16 Hb_015473_020 0.1623123078 - - hypothetical protein B456_001G090400 [Gossypium raimondii]
17 Hb_005081_060 0.162661581 - - hypothetical protein EUGRSUZ_C00833 [Eucalyptus grandis]
18 Hb_000336_170 0.1667964476 - - Polcalcin Jun o, putative [Ricinus communis]
19 Hb_008931_020 0.1700941595 - - Receptor like protein 46, putative [Theobroma cacao]
20 Hb_000959_290 0.1737272513 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]

Gene co-expression network

sample Hb_054886_010 Hb_054886_010 Hb_001985_010 Hb_001985_010 Hb_054886_010--Hb_001985_010 Hb_028487_080 Hb_028487_080 Hb_054886_010--Hb_028487_080 Hb_000414_100 Hb_000414_100 Hb_054886_010--Hb_000414_100 Hb_027556_080 Hb_027556_080 Hb_054886_010--Hb_027556_080 Hb_005529_050 Hb_005529_050 Hb_054886_010--Hb_005529_050 Hb_001277_150 Hb_001277_150 Hb_054886_010--Hb_001277_150 Hb_001985_010--Hb_027556_080 Hb_000336_170 Hb_000336_170 Hb_001985_010--Hb_000336_170 Hb_163950_060 Hb_163950_060 Hb_001985_010--Hb_163950_060 Hb_011980_020 Hb_011980_020 Hb_001985_010--Hb_011980_020 Hb_007943_040 Hb_007943_040 Hb_001985_010--Hb_007943_040 Hb_015473_020 Hb_015473_020 Hb_028487_080--Hb_015473_020 Hb_028487_080--Hb_005529_050 Hb_001821_070 Hb_001821_070 Hb_028487_080--Hb_001821_070 Hb_001031_020 Hb_001031_020 Hb_028487_080--Hb_001031_020 Hb_000846_020 Hb_000846_020 Hb_028487_080--Hb_000846_020 Hb_000635_170 Hb_000635_170 Hb_028487_080--Hb_000635_170 Hb_033153_010 Hb_033153_010 Hb_000414_100--Hb_033153_010 Hb_011671_290 Hb_011671_290 Hb_000414_100--Hb_011671_290 Hb_174829_040 Hb_174829_040 Hb_000414_100--Hb_174829_040 Hb_116349_050 Hb_116349_050 Hb_000414_100--Hb_116349_050 Hb_001437_200 Hb_001437_200 Hb_000414_100--Hb_001437_200 Hb_002572_060 Hb_002572_060 Hb_000414_100--Hb_002572_060 Hb_027556_080--Hb_005529_050 Hb_027556_080--Hb_163950_060 Hb_027556_080--Hb_011980_020 Hb_027556_080--Hb_000336_170 Hb_027556_080--Hb_007943_040 Hb_004096_040 Hb_004096_040 Hb_005529_050--Hb_004096_040 Hb_000876_060 Hb_000876_060 Hb_005529_050--Hb_000876_060 Hb_005529_050--Hb_015473_020 Hb_005529_050--Hb_000846_020 Hb_059580_010 Hb_059580_010 Hb_001277_150--Hb_059580_010 Hb_001277_150--Hb_033153_010 Hb_000215_120 Hb_000215_120 Hb_001277_150--Hb_000215_120 Hb_001277_150--Hb_001985_010 Hb_005648_030 Hb_005648_030 Hb_001277_150--Hb_005648_030 Hb_002760_060 Hb_002760_060 Hb_001277_150--Hb_002760_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0123696 7.82552 0 0.430645 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0906757 0.107019 0 0.127736 0.188453

CAGE analysis