Hb_001031_020

Information

Type -
Description -
Location Contig1031: 24249-27315
Sequence    

Annotation

kegg
ID vvi:100264911
description receptor-like protein 12
nr
ID CAN71611.1
description hypothetical protein VITISV_000631 [Vitis vinifera]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID A5ASG7
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000631 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001031_020 0.0 - - hypothetical protein VITISV_000631 [Vitis vinifera]
2 Hb_000563_380 0.11490782 - - hypothetical protein CICLE_v10007206mg [Citrus clementina]
3 Hb_028487_080 0.1159477127 - - Pectinesterase-1 precursor, putative [Ricinus communis]
4 Hb_008931_020 0.1243792582 - - Receptor like protein 46, putative [Theobroma cacao]
5 Hb_000635_170 0.1348539812 - - cytochrome P450, putative [Ricinus communis]
6 Hb_004108_200 0.1354418027 - - PREDICTED: adenylate isopentenyltransferase 3, chloroplastic [Jatropha curcas]
7 Hb_004162_030 0.1357488377 - - PREDICTED: lysosomal Pro-X carboxypeptidase-like [Jatropha curcas]
8 Hb_000414_100 0.1362531394 - - PREDICTED: uncharacterized protein LOC105643784 [Jatropha curcas]
9 Hb_000119_050 0.141403001 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
10 Hb_000117_110 0.1437086175 - - transferase, putative [Ricinus communis]
11 Hb_000398_200 0.1456999765 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
12 Hb_000959_290 0.1457936192 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
13 Hb_000045_110 0.148394506 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
14 Hb_007810_130 0.1501745683 - - PREDICTED: ankyrin-1-like [Prunus mume]
15 Hb_001190_020 0.1515613943 - - ankyrin repeat-containing protein, putative [Ricinus communis]
16 Hb_005588_010 0.1523293819 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
17 Hb_002572_060 0.1549229569 - - conserved hypothetical protein [Ricinus communis]
18 Hb_054886_010 0.1554676714 - - conserved hypothetical protein [Ricinus communis]
19 Hb_015473_020 0.1574089192 - - hypothetical protein B456_001G090400 [Gossypium raimondii]
20 Hb_005081_060 0.1576980421 - - hypothetical protein EUGRSUZ_C00833 [Eucalyptus grandis]

Gene co-expression network

sample Hb_001031_020 Hb_001031_020 Hb_000563_380 Hb_000563_380 Hb_001031_020--Hb_000563_380 Hb_028487_080 Hb_028487_080 Hb_001031_020--Hb_028487_080 Hb_008931_020 Hb_008931_020 Hb_001031_020--Hb_008931_020 Hb_000635_170 Hb_000635_170 Hb_001031_020--Hb_000635_170 Hb_004108_200 Hb_004108_200 Hb_001031_020--Hb_004108_200 Hb_004162_030 Hb_004162_030 Hb_001031_020--Hb_004162_030 Hb_000563_380--Hb_008931_020 Hb_005588_010 Hb_005588_010 Hb_000563_380--Hb_005588_010 Hb_045414_010 Hb_045414_010 Hb_000563_380--Hb_045414_010 Hb_000563_380--Hb_000635_170 Hb_033153_010 Hb_033153_010 Hb_000563_380--Hb_033153_010 Hb_015473_020 Hb_015473_020 Hb_028487_080--Hb_015473_020 Hb_005529_050 Hb_005529_050 Hb_028487_080--Hb_005529_050 Hb_001821_070 Hb_001821_070 Hb_028487_080--Hb_001821_070 Hb_000846_020 Hb_000846_020 Hb_028487_080--Hb_000846_020 Hb_028487_080--Hb_000635_170 Hb_011671_290 Hb_011671_290 Hb_008931_020--Hb_011671_290 Hb_008931_020--Hb_000635_170 Hb_000959_290 Hb_000959_290 Hb_008931_020--Hb_000959_290 Hb_000045_110 Hb_000045_110 Hb_008931_020--Hb_000045_110 Hb_002572_060 Hb_002572_060 Hb_008931_020--Hb_002572_060 Hb_013057_010 Hb_013057_010 Hb_000635_170--Hb_013057_010 Hb_000336_170 Hb_000336_170 Hb_000635_170--Hb_000336_170 Hb_000635_170--Hb_000045_110 Hb_004108_200--Hb_004162_030 Hb_004108_200--Hb_000635_170 Hb_004108_200--Hb_000045_110 Hb_004108_200--Hb_008931_020 Hb_006717_020 Hb_006717_020 Hb_004108_200--Hb_006717_020 Hb_083862_010 Hb_083862_010 Hb_004162_030--Hb_083862_010 Hb_161045_010 Hb_161045_010 Hb_004162_030--Hb_161045_010 Hb_002422_030 Hb_002422_030 Hb_004162_030--Hb_002422_030 Hb_011805_060 Hb_011805_060 Hb_004162_030--Hb_011805_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.414625 0.00499472 0.0345993 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00477763 0.0256685

CAGE analysis